YRC Public Data Repository - Protein Structure Prediction

Protein:	CSPA_ECOLI
Organism:	Escherichia coli
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|116609147, gi... - gi\|66963407\|ref\|ZP_00410979.1\| Cold-shock protein, DNA-binding [Arthrobacter sp. FB24], gi\|66871067\|...	3.0E-26	[4..70]	[1..67]
gi\|23004357 - gi\|23004357\|ref\|ZP_00047730.1\| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1]	1.0E-25	[4..70]	[1..67]
gi\|88856605, gi\|... - gi\|88856605\|ref\|ZP_01131262.1\| cold shock protein [marine actinobacterium PHSC20C1], gi\|88814259\|gb\|...	1.0E-25	[4..70]	[1..67]
gi\|34498661, gi\|... - gi\|34498661\|ref\|NP_902876.1\| cold shock transcription regulator protein [Chromobacterium violaceum A...	1.0E-25	[4..70]	[44..110]
gi\|349561 - gi\|349561\|gb\|AAB66357.1\| DNA-binding protein gi\|349561\|gb\|AAB... - DNA-binding protein	2.0E-25	[1..70]	[1..70]
gi\|71368524, gi\|... - gi\|71368524\|ref\|ZP_00659019.1\| Cold-shock protein, DNA-binding [Nocardioides sp. JS614], gi\|71155753...	2.0E-25	[4..70]	[1..67]
gi\|25029285, gi\|... - gi\|25029285\|ref\|NP_739339.1\| hypothetical protein CE2729 [Corynebacterium efficiens YS-314], gi\|2349...	2.0E-25	[4..70]	[185..251]
gi\|26987721, gi\|... - gi\|26987721\|ref\|NP_743146.1\| cold-shock domain-contain protein [Pseudomonas putida KT2440], gi\|24982...	3.0E-25	[1..70]	[97..165]
gi\|29608478, gi\|... - gi\|29831363\|ref\|NP_825997.1\| cold shock protein [Streptomyces avermitilis MA-4680], gi\|29608478\|dbj\|...	4.0E-25	[4..70]	[1..67]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKMTGIVK WFNADKGFGF ITPDDGSKDV FVHFSAIQND GYKSLDEGQK VSFTIESGAK  60
   61 GPAAGNVTSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1mjcA
Description:	CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.67999218416128	bayes_pls_golite062009
DNA binding	2.0554473444871	bayes_pls_golite062009
binding	1.49502978097244	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: