YRC Public Data Repository - Protein Structure Prediction

Protein:	ARCA_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARCA_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|152988453, gi... - gi\|94417647\|ref\|ZP_01297464.1\| hypothetical protein PaerP_01000424 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..418]	[1..418]
gi\|116053318, gi... - gi\|53726658\|ref\|ZP_00141649.2\| COG2235: Arginine deiminase [Pseudomonas aeruginosa UCBPP-PA14], gi\|1... gi\|254243948, gi... - gi\|84323907\|ref\|ZP_00971973.1\| COG2235: Arginine deiminase [Pseudomonas aeruginosa 2192], gi\|2542439...	0.0	[1..418]	[1..418]
gi\|218894271, gi... - gi\|218894271\|ref\|YP_002443141.1\| arginine deiminase [Pseudomonas aeruginosa LESB58], gi\|218774500\|em... gi\|107104272 - gi\|107104272\|ref\|ZP_01368190.1\| hypothetical protein PaerPA_01005346 [Pseudomonas aeruginosa PACS2]	0.0	[1..418]	[1..418]
gi\|49088232 - gi\|49088232\|gb\|AAT51546.1\| PA5171 [synthetic construct]	0.0	[1..418]	[1..418]
gi\|75766120, gi\|... - gi\|75766121\|pdb\|2ACI\|D Chain D, Structure Of D166a Arginine Deiminase, gi\|75766120\|pdb\|2ACI\|C Chain ...	0.0	[1..418]	[1..418]
gi\|161354823 - gi\|161354823\|ref\|ZP_02100703.1\| arginine deiminase [Burkholderia pseudomallei 1106b] gi\|167719579 - gi\|167719579\|ref\|ZP_02402815.1\| arginine deiminase [Burkholderia pseudomallei DM98] gi\|167894269 - gi\|167894269\|ref\|ZP_02481671.1\| arginine deiminase [Burkholderia pseudomallei 7894] gi\|167902663 - gi\|167902663\|ref\|ZP_02489868.1\| arginine deiminase [Burkholderia pseudomallei NCTC 13177] gi\|167738560 - gi\|167738560\|ref\|ZP_02411334.1\| arginine deiminase [Burkholderia pseudomallei 14] gi\|167824161 - gi\|167824161\|ref\|ZP_02455632.1\| arginine deiminase [Burkholderia pseudomallei 9] gi\|254216996, gi... - gi\|90294344\|ref\|ZP_01213938.1\| hypothetical protein Bpse17_02000882 [Burkholderia pseudomallei 1710a... gi\|82529640 - gi\|82529640\|ref\|ZP_00888884.1\| COG2235: Arginine deiminase [Burkholderia pseudomallei 1106a] ARCA_BURMA - Arginine deiminase OS=Burkholderia mallei GN=arcA PE=3 SV=1 gi\|76578180, gi\|... - gi\|76808727\|ref\|YP_333523.1\| arginine deiminase [Burkholderia pseudomallei 1710b], gi\|76578180\|gb\|AB... gi\|67752893, gi\|... - gi\|67752893\|ref\|ZP_00491849.1\| COG2235: Arginine deiminase [Burkholderia pseudomallei Pasteur], gi\|1... gi\|169654329, gi... - gi\|67762833\|ref\|ZP_00501531.1\| COG2235: Arginine deiminase [Burkholderia pseudomallei S13], gi\|25419... gi\|124294615, gi... - gi\|124386595\|ref\|YP_001026246.1\| arginine deiminase [Burkholderia mallei NCTC 10229], gi\|124294615\|g... ARCA_BURPS - Arginine deiminase OS=Burkholderia pseudomallei (strain K96243) GN=arcA PE=3 SV=1 ARCA_BURMA - Arginine deiminase OS=Burkholderia mallei (strain ATCC 23344) GN=arcA PE=3 SV=1 gi\|167918931 - gi\|167918931\|ref\|ZP_02506022.1\| arginine deiminase [Burkholderia pseudomallei BCC215] ARCA_BURPS - Arginine deiminase OS=Burkholderia pseudomallei GN=arcA PE=3 SV=1	0.0	[1..418]	[1..418]
gi\|99912248, gi\|... - gi\|99912248\|ref\|ZP_01319012.1\| hypothetical protein Bpse1_03001618 [Burkholderia pseudomallei 1655],...	0.0	[1..418]	[1..418]
gi\|242316419, gi... - gi\|82536842\|ref\|ZP_00895844.1\| hypothetical protein Bpse110_02001846 [Burkholderia pseudomallei 1106... gi\|83622668, gi\|... - gi\|83622668\|ref\|ZP_00932970.1\| COG2235: Arginine deiminase [Burkholderia mallei JHU], gi\|254206098\|r... gi\|83619189, gi\|... - gi\|83619189\|ref\|ZP_00929630.1\| COG2235: Arginine deiminase [Burkholderia mallei FMH], gi\|254199774\|r... gi\|226197331, gi... - gi\|226197331\|ref\|ZP_03792908.1\| arginine deiminase [Burkholderia pseudomallei Pakistan 9], gi\|225930... gi\|237812264, gi... - gi\|237812264\|ref\|YP_002896715.1\| arginine deiminase [Burkholderia pseudomallei MSHR346], gi\|23750539... gi\|126453511, gi... - gi\|126453511\|ref\|YP_001066252.1\| arginine deiminase [Burkholderia pseudomallei 1106a], gi\|126227153\|... gi\|67638672, gi\|... - gi\|67638672\|ref\|ZP_00437607.1\| COG2235: Arginine deiminase [Burkholderia mallei 10399], gi\|100918288... gi\|167910908 - gi\|167910908\|ref\|ZP_02497999.1\| arginine deiminase [Burkholderia pseudomallei 112] gi\|194571159, gi... - gi\|83677127\|ref\|ZP_00938886.1\| COG2235: Arginine deiminase [Burkholderia pseudomallei 406e], gi\|2542... gi\|194313672, gi... - gi\|254178009\|ref\|ZP_04884664.1\| arginine deiminase [Burkholderia mallei ATCC 10399], gi\|194313672\|re... gi\|126449274, gi... - gi\|67645495\|ref\|ZP_00443782.1\| COG2235: Arginine deiminase [Burkholderia mallei NCTC 10247], gi\|1264... gi\|167815782 - gi\|167815782\|ref\|ZP_02447462.1\| arginine deiminase [Burkholderia pseudomallei 91] gi\|238521258, gi... - gi\|67640528\|ref\|ZP_00439331.1\| arginine deiminase [Burkholderia mallei GB8 horse 4], gi\|238521258\|gb... gi\|134277701, gi... - gi\|134277701\|ref\|ZP_01764416.1\| arginine deiminase [Burkholderia pseudomallei 305], gi\|134251351\|gb\|... gi\|167845698 - gi\|167845698\|ref\|ZP_02471206.1\| arginine deiminase [Burkholderia pseudomallei B7210] gi\|67737400, gi\|... - gi\|67737400\|ref\|ZP_00488173.1\| COG2235: Arginine deiminase [Burkholderia pseudomallei 668], gi\|12643... gi\|67685753 - gi\|67685753\|ref\|ZP_00479558.1\| COG2235: Arginine deiminase [Burkholderia pseudomallei 1710a] gi\|100264411, gi... - gi\|87314195\|ref\|ZP_01095248.1\| COG2235: Arginine deiminase [Burkholderia mallei 2002721280], gi\|2543... gi\|254188806, gi... - gi\|254188806\|ref\|ZP_04895317.1\| arginine deiminase [Burkholderia pseudomallei Pasteur 52237], gi\|194... gi\|85064772 - gi\|85064772\|ref\|ZP_01025625.1\| COG2235: Arginine deiminase [Burkholderia mallei 10229] gi\|217421682, gi... - gi\|217421682\|ref\|ZP_03453186.1\| arginine deiminase [Burkholderia pseudomallei 576], gi\|217395424\|gb\|...	0.0	[1..418]	[8..425]
gi\|167620014 - gi\|167620014\|ref\|ZP_02388645.1\| arginine deiminase [Burkholderia thailandensis Bt4] gi\|83718749, gi\|... - gi\|83718749\|ref\|YP_442905.1\| arginine deiminase [Burkholderia thailandensis E264], gi\|83652574\|gb\|AB...	0.0	[1..418]	[1..418]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEKTKLGV HSEAGKLRKV MVCSPGLAHQ RLTPSNCDEL LFDDVIWVNQ AKRDHFDFVT  60
   61 KMRERGIDVL EMHNLLTETI QNPEALKWIL DRKITADSVG LGLTSELRSW LESLEPRKLA 120
  121 EYLIGGVAAD DLPASEGANI LKMYREYLGH SSFLLPPLPN TQFTRDTTCW IYGGVTLNPM 180
  181 YWPARRQETL LTTAIYKFHP EFANAEFEIW YGDPDKDHGS STLEGGDVMP IGNGVVLIGM 240
  241 GERSSRQAIG QVAQSLFAKG AAERVIVAGL PKSRAAMHLD TVFSFCDRDL VTVFPEVVKE 300
  301 IVPFSLRPDP SSPYGMNIRR EEKTFLEVVA ESLGLKKLRV VETGGNSFAA EREQWDDGNN 360
  361 VVCLEPGVVV GYDRNTYTNT LLRKAGVEVI TISASELGRG RGGGHCMTCP IVRDPIDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	127.0
Match:	1rxxA
Description:	Structure of arginine deiminase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-arginine deiminase activity	3.65570370593798	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	1.80356530015579	bayes_pls_golite062009
N-succinylarginine dihydrolase activity	1.79190392361658	bayes_pls_golite062009
catalytic activity	1.2603605268935	bayes_pls_golite062009
arginine deiminase activity	1.06118411192651	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.89634749643842	bayes_pls_golite062009
hydrolase activity	0.79014898516962	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: