YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7546421, gi\|7...
Organism:	Escherichia coli
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7546421, gi|7....

Description	E-value	Query Range	Subject Range
gi\|311538, gi\|628534 - pir\|\|S39401 hydrogenase maturation factor hupD [similarity] - Bradyrhizobium japonicum, gi\|311538\|em...	189.0	[0..2]	[160..9]
gi\|78195775, gi\|... - gi\|78224520\|ref\|YP_386267.1\| peptidase M52, hydrogenase maturation peptidase [Geobacter metallireduc...	187.0	[0..1]	[158..1]
HUPD_BRAJA - Hydrogenase expression/formation protein hupD OS=Bradyrhizobium japonicum GN=hupD PE=3 SV=2 HUPD_BRADU - Hydrogenase expression/formation protein HupD OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / I...	186.0	[0..2]	[160..9]
gi\|83376049 - gi\|83376049\|gb\|ABC17830.1\| HupD [Bradyrhizobium sp. UPM1029]	184.0	[0..2]	[161..10]
gi\|83368436, gi\|... - gi\|83368436\|ref\|ZP_00913299.1\| Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase exp...	181.0	[0..2]	[158..8]
gi\|93354089, gi\|... - gi\|94310237\|ref\|YP_583447.1\| HyaD peptidase [Ralstonia metallidurans CH34], gi\|93354089\|gb\|ABF08178....	180.0	[0..2]	[161..20]
gi\|16421700, gi\|... - gi\|16766446\|ref\|NP_462061.1\| hydrogenase 2 maturation endopeptidase [Salmonella typhimurium LT2], gi... lcl\|NC_016856.1_... - [gene=hybD] [protein=hydrogenase 2 maturation endopeptidase] [protein_id=YP_005239309.1] [location=c... gi\|224584942, gi... - gi\|224584942\|ref\|YP_002638741.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|197262619, gi... - gi\|197262619\|ref\|ZP_03162693.1\| hydrogenase expression/formation protein [Salmonella enterica subsp.... gi\|199604401, gi... - gi\|200387303\|ref\|ZP_03213915.1\| hydrogenase expression/formation protein [Salmonella enterica subsp.... gi\|194736032, gi... - gi\|194736032\|ref\|YP_002116101.1\| hydrogenase expression/formation protein [Salmonella enterica subsp... gi\|197212220, gi... - gi\|197248517\|ref\|YP_002148067.1\| hydrogenase expression/formation protein [Salmonella enterica subsp... gi\|195633252, gi... - gi\|195633252\|gb\|EDX51666.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|194403241, gi... - gi\|194444578\|ref\|YP_002042410.1\| hydrogenase expression/formation protein [Salmonella enterica subsp... gi\|205331071, gi... - gi\|205331071\|gb\|EDZ17835.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|197289030, gi... - gi\|197289030\|gb\|EDY28401.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|161365490, gi... - gi\|161616126\|ref\|YP_001590091.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ... gi\|205323275, gi... - gi\|205323275\|gb\|EDZ11114.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|62181657, gi\|... - gi\|62181657\|ref\|YP_218074.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ente...	180.0	[0..1]	[162..1]
gi\|67535661, gi\|... - gi\|67542971\|ref\|ZP_00420905.1\| Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase exp...	180.0	[0..3]	[162..17]
gi\|194448917, gi... - gi\|194448917\|ref\|YP_002047141.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ... gi\|205343443, gi... - gi\|205343443\|gb\|EDZ30207.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|205348455, gi... - gi\|205348455\|gb\|EDZ35086.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|168242965, gi... - gi\|205337770\|gb\|EDZ24534.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|168231738, gi... - gi\|205333909\|gb\|EDZ20673.1\| hydrogenase expression/formation protein [Salmonella enterica subsp. ent... gi\|160867630, gi... - gi\|161506283\|ref\|YP_001573395.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ... gi\|56129344, gi\|... - gi\|56415087\|ref\|YP_152162.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ente... gi\|238909946 - gi\|238909946\|ref\|ZP_04653783.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. e... gi\|206710208, gi... - gi\|207858405\|ref\|YP_002245056.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ... gi\|205273845, gi... - gi\|205354064\|ref\|YP_002227865.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ... gi\|204928109, gi... - gi\|204928109\|ref\|ZP_03219309.1\| hydrogenase expression/formation protein [Salmonella enterica subsp.... gi\|197938422, gi... - gi\|198243906\|ref\|YP_002217123.1\| hydrogenase expression/formation protein [Salmonella enterica subsp... gi\|197095493, gi... - gi\|197364016\|ref\|YP_002143653.1\| hydrogenase 2 maturation endopeptidase [Salmonella enterica subsp. ... gi\|194469608, gi... - gi\|194469608\|ref\|ZP_03075592.1\| hydrogenase expression/formation protein [Salmonella enterica subsp....	179.0	[0..1]	[162..1]
gi\|84712553, gi\|... - gi\|84712553\|ref\|ZP_01020433.1\| Peptidase M52, hydrogen uptake protein:Peptidase M52, hydrogenase exp...	179.0	[0..2]	[160..19]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILVLGVGN ILLTDEAIGV RIVEALEQRY ILPDYVEILD GGTAGMELLG DMANRDHLII  60
   61 ADAIVSKKNA PGTMMILRDE EVPALFTNKI SPHQLGLADV LSALRFTGEF PKKLTLVGVI 120
  121 PESLEPHIGL TPTVEAMIEP ALEQVLAALR ESGVEAIPRS DS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	1cfzA
Description:	Hydrogenase maturating endopeptidase HybD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11092890710142	bayes_pls_golite062009
peptidase activity	0.52936925148529	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: