| Protein: | gi|20465667, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 479 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20465667, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
505.0 | [0..1] | [458..1] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MEKSGPVQKA VVLQPFVKLV RLVARAFYDD YTTKSDNQQK SARSDNRGIA AVVLDALARR 60
61 QWVREEDLAK DLQLHAKQLR KIIRLFEEEK LIMRDHRKET AKGAKMYSAA VAATTDGRAE 120
121 DKVKLHTHSY CCLDYAQICD VVRFRLHRMK KRLKDELE
|
| Detection Method: |  |
| Confidence: | 19.154902 |
| Match: | 1q1hA |
| Description: | An extended winged helix domain in general transcription factor E/IIE alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [159-215] |
1 11 21 31 41 51
| | | | | |
1 DKNTVQEYGC PNCQRKYNAL DALRLISMVD DSFHCENCNG ELVVECNKLT SEEVVDG
|
| Detection Method: | |
| Confidence: | 3.29 |
| Match: | 1vd4A |
| Description: | Solution structure of the zinc finger domain of TFIIE alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [216-479] |
1 11 21 31 41 51
| | | | | |
1 DDNARRRRRE NLKNMLQKLE VQMKPLMDQL NRVKDLPIPE FGSFLAWEAR AAMAARENGD 60
61 LNPNDPLRSQ GGYGSTPMPF LGETKVEVNL GDGNEDVKSK GGDSSLKVLP PWMIKEGMNL 120
121 TEEQRGEMRQ EAKVDGGAGA AAKLSDDKKS AIGNGDEKDL KDEYLKAYYA ELMKQQELAA 180
181 RRNQQESAGE PTSGIQSGTV YSGRQVSMKA KREEDEDEDE EEVEWEEKAP VTANGNYKVD 240
241 LNVEAEASGG EEEEEEDDVD WEEG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
