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View Structure Prediction Details

Protein: gi|42568893, gi|...
Organism: Arabidopsis thaliana
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568893, gi|....

Description E-value Query
Range
Subject
Range
MTEF1_ARATH - Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2
266.0 [0..1] [283..2]
gi|125557150 - gi|125557150|gb|EAZ02686.1| hypothetical protein OsI_24800 [Oryza sativa Indica Group]
gi|50934037, gi|... - gi|50934037|ref|XP_476546.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|34394...
217.0 [0..31] [280..321]
gi|85541253 - gi|85541253|gb|ABC70867.1| mTERF-like protein [Brassica napus]
214.0 [0..19] [272..36]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIARCSLFPP PCFSAVRIRC FAGETSDTGI LFREKLIYLQ DLNVDPHKAL RVNPSLRSAP  60
   61 ISSVVSVETL LSSTGLSRPA VGRILDMFPD LLTSDPESEI LPVLRFLSNE ISISEQDIPK 120
  121 SISRCPRLLI SSVD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [135-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQLRPALTFL KTLGFVGRDT ITSRNTVLLV SNVERTLIPK IEYLEEGLGF TREEVAKMVV  60
   61 RSPALLTYSV DNNLVPKVEF FIEEMRGDVK ELKRFPQYFS FSLERKIKPR HRLLKEHGIL 120
  121 MPLSEMLKVS DGQFNHWLLE LRLRSAERR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle