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View Structure Prediction Details

Protein: gi|44681452, gi|...
Organism: Arabidopsis thaliana
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|44681452, gi|....

Description E-value Query
Range
Subject
Range
gi|25412163, gi|... - gi|3738317|gb|AAC63658.1| unknown protein [Arabidopsis thaliana], pir||F84629 hypothetical protein A...
266.0 [0..1] [188..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHFSARLKL LSSNDGLSFG VDSRDQFRQS LYMAGGGSPL VPIRMSRLKF CARIFSSYSF  60
   61 PYKRKKIRDL DNTEKNLDID EDNDEWDFDG DDDGLETDDH LS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CFRGLVLDIS YRPVNVVCWK RAICLEYMDK ADVLEYYDQT VSSPTGSFYI PAVLRVPH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [161-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLQVVKRRRV KNSLSRKNIL LRDDYTCQYC SSRENLTIDH VMPVSRGGEW TWQNLVAACS  60
   61 RCNSRKGQKT ADEAHMKLLK VPKEPKDYDI VAIPLTNAAI RMLRSNKGMP EEWRQYLAKP 120
  121 LSET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2qgpA
Description: No description for 2qgpA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle