YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38566626, gi\|...
Organism:	Arabidopsis thaliana
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38566626, gi|....

Description	E-value	Query Range	Subject Range
gi\|125602814, gi... - gi\|215767849\|dbj\|BAH00078.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125602814\|gb\|...	186.0	[0..1]	[182..1]
gi\|92893214 - gi\|92893214\|gb\|ABE91666.1\| GINS complex, Psf3 component [Medicago truncatula]	185.0	[0..1]	[185..1]
PSF3_PHANO - DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FG... PSF3_PHANO - DNA replication complex GINS protein PSF3 OS=Phaeosphaeria nodorum GN=PSF3 PE=3 SV=1	184.0	[0..1]	[171..1]
gi\|15221930 - gi\|15221930\|ref\|NP_173342.1\| TTN10 (TITAN 10) [Arabidopsis thaliana]	178.0	[0..1]	[185..1]
gi\|166796963, gi... - gi\|62859339\|ref\|NP_001016123.1\| hypothetical protein LOC548877 [Xenopus (Silurana) tropicalis], gi\|1...	177.0	[0..3]	[185..17]
gi\|76779920, gi\|... - gi\|76779920\|gb\|AAI06315.1\| Flj13912 protein [Xenopus laevis], gi\|29365483\|dbj\|BAC66460.1\| Psf3 [Xeno...	175.0	[0..3]	[185..17]
gi\|50753449 - gi\|50753449\|ref\|XP_413991.1\| PREDICTED: similar to hypothetical protein FLJ13912 [Gallus gallus]	175.0	[0..3]	[185..794]
GINS3 - GINS complex subunit 3 (Psf3 homolog)	174.0	[0..3]	[185..18]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKYFDIDDI LIEEEFVPVL FHKTANGVTI DPSAETNCAE QGSKVELPFW LAHELHLRQA  60
   61 VTINLPPCFD QKTRLEVQAD AAYVDLRSRC PYFYEFGCKI EPLVTDRTLG ILLSTAFKIR 120
  121 YKEALTKVYT AAHITASKYL SFLTKEETNL YEAAHLSMTA FKKWRTGGPR FQRASILGRK 180
  181 RKDSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2q9qD
Description:	No description for 2q9qD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits