| Protein: | ser-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 635 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ser-1.
| Description | E-value | Query Range |
Subject Range |
|
|
383.0 | [0..1] | [635..49] |
|
Region A: Residues: [1-303] |
1 11 21 31 41 51
| | | | | |
1 MGIYHFNGVA LFLLPVLCLI GLIGNFLVCV AIATDRRLHN VTNYFLFSLA LADLLVCCIV 60
61 MPLSIVVEVR HGVWTWSVSM CLLYVYSDVF LCSASIVHMS VISLDRYLGI SQPLRTRNRS 120
121 KTLIFIKIAI VWVVTLLVSC PIAVLAMHDT ANILRNNQCM IFSRYYIIYG STMTFLIPLC 180
181 IMGVTYAKTT QLLNKQASIL SQKAGDKFNG NGLRRTMPHR KLGYARTYSA TVNGTIANGK 240
241 AIGAHGRTMS SISNIANGET ADRLGTSRPS INTNGHKQLQ KASTINKWKS RTSNLVTNFA 300
301 NKV
|
| Detection Method: |  |
| Confidence: | 44.30103 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [304-438] |
1 11 21 31 41 51
| | | | | |
1 GRRSSLQTAT QDLANEHKAT RVLAVVFACF FICWTPFFFI NFLIGFGGEN VQIPDWVASI 60
61 FLWLGYVSST INPIIYTVFN KRFRQAFVRI LRCQCFHPLR DSHQMYSRNF TTTIVPDTYT 120
121 CSRSNQERTT SVITR
|
| Detection Method: | |
| Confidence: | 3.74 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [439-635] |
1 11 21 31 41 51
| | | | | |
1 DETRSARSSE RPEPSRARSE ISEEPVARTN GKLTSEKKKI SLPSFPRVSS SRDSRATTEA 60
61 STTDEETKPL IPKSTVPATV INIPEQLINP IKKSLTTIIN MPLLDETIPE KAQVHHKSQT 120
121 LLTSSTLNFA TFSTCPQQPT RSYSCVDCKK AEKMLSSDVS DMMTTSTAST ASTVNGAPRK 180
181 HLTLFNHFDS AIKETFL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
