| Protein: | hif-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 719 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hif-1.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..3] | [365..9] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MEDNRKRNME RRRETSRHAA RDRRSKESDI FDDLKMCVPI VEEGTVTHLD RIALLRVAAT 60
61 ICRLRKTAGN VLEN
|
| Detection Method: |  |
| Confidence: | 4.154902 |
| Match: | 1a0aA |
| Description: | Pho4 B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [75-454] |
1 11 21 31 41 51
| | | | | |
1 NLDNEITNEV WTEDTIAECL DGFVMIVDSD SSILYVTESV AMYLGLTQTD LTGRALRDFL 60
61 HPSDYDEFDK QSKMLHKPRG EDTDTTGINM VLRMKTVISP RGRCLNLKSA LYKSVSFLVH 120
121 SKVSTGGHVS FMQGITIPAG QGTTNANASA MTKYTESPMG AFTTRHTCDM RITFVSDKFN 180
181 YILKSELKTL MGTSFYELVH PADMMIVSKS MKELFAKGHI RTPYYRLIAA NDTLAWIQTE 240
241 ATTITHTTKG QKGQYVICVH YVLGIQGAEE SLVVCTDSMP AGMQVDIKKE VDDTRDYIGR 300
301 QPEIVECVDF TPLIEPEDPF DTVIEPVVGG EEPVKQADMG ARKNSYDDVL QWLFRDQPSS 360
361 PPPARYRSAD RFRTTEPSNF
|
| Detection Method: | |
| Confidence: | 48.09691 |
| Match: | 1wa9A |
| Description: | Crystal Structure of the PAS repeat region of the Drosophila clock protein PERIOD |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [455-525] |
1 11 21 31 41 51
| | | | | |
1 GSALASPDFM DSSSRTSRPK TSYGRRAQSQ GSRTTGSSST SASATLPHSA NYSPLAEGIS 60
61 QCGLNSPPSI K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [526-719] |
1 11 21 31 41 51
| | | | | |
1 SGQVVYGDAR SMGRSCDPSD SSRRFSALSP SDTLNVSSTR GINPVIGSND VFSTMPFADS 60
61 IAIAERIDSS PTLTSGEPIL CDDLQWEEPD LSCLAPFVDT YDMMQMDEGL PPELQALYDL 120
121 PDFTPAVPQA PAARPVHIDR SPPAKRMHQS GPSDLDFMYT QHYQPFQQDE TYWQGQQQQN 180
181 EQQPSSYSPF PMLS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
