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View Structure Prediction Details

Protein: gi|44022089, gi|...
Organism: Arabidopsis thaliana
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|44022089, gi|....

Description E-value Query
Range
Subject
Range
RL5_ERWCT - 50S ribosomal protein L5 OS=Erwinia carotovora subsp. atroseptica GN=rplE PE=3 SV=1
RL5_PECAS - 50S ribosomal protein L5 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rplE PE...
250.0 [0..1] [182..1]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLNFHYED VSRQDPLLKP NHANVMEVPG SCEIRVVPKA PYNFIIKNGK LAMEIPRGQK  60
   61 FIQTQRGSTG KSFRSNPFLG SNKDKGYVSD LARQSTLRGH GMSNFSVRIS TVMSLLDFPV 120
  121 EIRKNSIQFS METEFCEFSP ELEDHFEIFE HIRGFNVTII TSANTQDETL PLWSGFLQKD 180
  181 EGETQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 1iq4A
Description: Ribosomal protein L5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural molecule activity 0.662519135971 bayes_pls_golite062009
structural constituent of ribosome 0.652676036630401 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle