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View Structure Prediction Details

Protein: gi|10312227, gi|...
Organism: Plasmodium falciparum
Length: 371 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10312227, gi|....

Description E-value Query
Range
Subject
Range
gi|601930, gi|284667 - gi|601930|gb|AAA57152.1| neurofilament-H, pir||A43427 neurofilament triplet H1 protein - rabbit (fra...
132.0 [0..19] [370..64]
gi|24020878, gi|... - gi|50979202|ref|NP_001003352.1| neurofilament, heavy polypeptide 200kDa [Canis lupus familiaris], gi...
128.0 [0..19] [367..670]
gi|76639351 - gi|76639351|ref|XP_870725.1| PREDICTED: similar to neurofilament, heavy polypeptide 200kDa isoform 2...
127.0 [0..21] [370..579]
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
127.0 [0..31] [370..819]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIYNITFL FILLNLYINE NNFIRNELIN EKNHNLRNGS MYNNDKILSK NEVDTNIESN  60
   61 ENSIHESGHK IDGEEVLKAN VDDITYKKKN VDDSEIPFSG YDIQATYQFP STSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.604 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.445 a.133.1 Phospholipase A2, PLA2
View Download 0.354 a.1.1 Globin-like
View Download 0.333 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.330 c.84.1 Phosphoglucomutase, first 3 domains

Predicted Domain #2
Region A:
Residues: [115-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNNVIPLPIK QSGENQYTVT SISGIQKGAN GLTGATENIT QVVQANSETN KNPTSHSNST  60
   61 TTSLNNNILG WEFGGGAPQN GAAEDKKTEY LLEQIKIPSW DRNNIPDENE QVIEDPQEDN 120
  121 KDEDEDEETE TENLETEDDN NEEIEENEED DIDEESVEEK EEEEEKKEEE EKKEEKKEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [294-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKPDNEITNE VKEEQKYSSP SDINAQNLIS NKNKKNDETK KTAENIVKTL VGLFNEKNEI  60
   61 DSTINNLVQE MIHLFSNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle