YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494406
Organism:	Plasmodium falciparum
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494406.

Description	E-value	Query Range	Subject Range
gi\|83592924, gi\|... - gi\|83592924\|ref\|YP_426676.1\| ribosome recycling factor [Rhodospirillum rubrum ATCC 11170], gi\|835758...	233.0	[0..324]	[498..8]
RRF_RHOP5 - Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisA53) GN=frr PE=3 SV=1	230.0	[0..322]	[498..2]
gi\|23010622 - gi\|23010622\|ref\|ZP_00051247.1\| COG0233: Ribosome recycling factor [Magnetospirillum magnetotacticum ...	228.0	[0..324]	[498..4]
RRF_RUBXD - Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=frr PE=3 SV=...	227.0	[0..322]	[498..1]
RRF_AZOVD - Ribosome-recycling factor OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=frr PE=3 SV=1 gi\|23105090, gi\|... - gi\|67156409\|ref\|ZP_00418002.1\| Ribosome recycling factor [Azotobacter vinelandii AvOP], ref\|ZP_00091...	227.0	[0..323]	[498..1]
RRF_PSEA8 - Ribosome-recycling factor OS=Pseudomonas aeruginosa (strain LESB58) GN=frr PE=3 SV=1 gi\|84325659, gi\|... - gi\|84325659\|ref\|ZP_00973693.1\| COG0233: Ribosome recycling factor [Pseudomonas aeruginosa 2192], gi\|... gi\|84319633, gi\|... - gi\|84319633\|ref\|ZP_00968027.1\| COG0233: Ribosome recycling factor [Pseudomonas aeruginosa C3719], gi... RRF_PSEAB - Ribosome-recycling factor OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=frr PE=3 SV=1 RRF_PSEAE - Ribosome-recycling factor OS=Pseudomonas aeruginosa GN=frr PE=3 SV=1 RRF_PSEAE - Ribosome-recycling factor OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|107103167 - gi\|107103167\|ref\|ZP_01367085.1\| hypothetical protein PaerPA_01004236 [Pseudomonas aeruginosa PACS2]	226.0	[0..323]	[498..1]
RRF_PSEA7 - Ribosome-recycling factor OS=Pseudomonas aeruginosa (strain PA7) GN=frr PE=3 SV=1	225.0	[0..323]	[498..1]
RRF_RHOPB - Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisB18) GN=frr PE=3 SV=1	224.0	[0..326]	[498..6]
RRF_SALG2 - Ribosome-recycling factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frr PE=3 SV=1 gi\|204927412, gi... - gi\|204927412\|ref\|ZP_03218614.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... gi\|200388182, gi... - gi\|200388182\|ref\|ZP_03214794.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... RRF_SALDC - Ribosome-recycling factor OS=Salmonella dublin (strain CT_02021853) GN=frr PE=3 SV=1 gi\|213425945 - gi\|213425945\|ref\|ZP_03358695.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1 gi\|213416682 - gi\|213416682\|ref\|ZP_03349826.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... gi\|213163136 - gi\|213163136\|ref\|ZP_03348846.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALEP - Ribosome-recycling factor OS=Salmonella enteritidis PT4 (strain P125109) GN=frr PE=3 SV=1 gi\|16759209 - gi\|16759209\|ref\|NP_454826.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ... RRF_SALHS - Ribosome-recycling factor OS=Salmonella heidelberg (strain SL476) GN=frr PE=3 SV=1 RRF_SALNS - Ribosome-recycling factor OS=Salmonella newport (strain SL254) GN=frr PE=3 SV=1 RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=frr PE=... gi\|168823247, gi... - gi\|205340485\|gb\|EDZ27249.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar W... gi\|29136383, gi\|... - gi\|29140759\|ref\|NP_804101.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ... gi\|195632657, gi... - gi\|195632657\|gb\|EDX51111.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar N... gi\|197240067, gi... - gi\|197261812\|ref\|ZP_03161886.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... RRF_SALA4 - Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1 RRF_SALSV - Ribosome-recycling factor OS=Salmonella schwarzengrund (strain CVM19633) GN=frr PE=3 SV=1 gi\|194457134, gi... - gi\|194470770\|ref\|ZP_03076754.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1 RRF_SALPC - Ribosome-recycling factor OS=Salmonella paratyphi C (strain RKS4594) GN=frr PE=3 SV=1 RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1 RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1 gi\|214000838 - gi\|214000838\|ref\|ZP_03411573.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1 gi\|213646665 - gi\|213646665\|ref\|ZP_03376718.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... gi\|213580802 - gi\|213580802\|ref\|ZP_03362628.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=frr] [protein=ribosome recycling factor] [protein_id=YP_005235890.1] [location=257853..258410] RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1 RRF_SALAR - Ribosome-recycling factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=frr ... RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1 gi\|205331572, gi... - gi\|205331572\|gb\|EDZ18336.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4... gi\|205322189, gi... - gi\|205322189\|gb\|EDZ10028.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S... gi\|168263914, gi... - gi\|205347503\|gb\|EDZ34134.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H... gi\|205336212, gi... - gi\|205336212\|gb\|EDZ22976.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H... gi\|168234997, gi... - gi\|197291879\|gb\|EDY31229.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S... gi\|168230526, gi... - gi\|205335095\|gb\|EDZ21859.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar K... RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis (strain SC-B67) GN=frr PE=3 SV=1 gi\|238911285 - gi\|238911285\|ref\|ZP_04655122.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1	223.0	[0..323]	[498..1]
gi\|114327599, gi... - gi\|114327599\|ref\|YP_744756.1\| ribosome recycling factor (RRF) [Granulibacter bethesdensis CGDNIH1], ...	220.0	[0..310]	[498..5]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFQHFLSLH NEKKISMFFY TFLILYISHV RIFYDCLNLK NEKNYNVLLK NGNNNSPSYY  60
   61 FLNSNYRNNN NFLRRKENYQ RVLLLYN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKFNDGAKRN SYILYAHSKK NKNKNKINHN INITKRETVS RRDRDDEDDN YDDDDENYDD  60
   61 DDDNYDDDEN YEDDENYDDD DENYDDGENY EDDENYNDDE NYDDDENYDD EYDDDDYPFN 120
  121 NDDIDIGDKD TPYET

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKSKIRSKDE NVAHQNKGGN TLSLENYKIK KNANSDLETD KKNKVKKKQD EEMDETNKNN  60
   61 KNETNEKDEK DEKEEKDDNI NDNNDDIMED EYEEDYITEE HIKDLHKICS EK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [335-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVYEFLKK ESYRFNLNNV SNDMFENEKV KINERIYTVK HICHIKKKEN LFTITPYDPY  60
   61 FVNFLYQHFI KEFDELKFYV KDKSLYAIIP PISENLKNEI KMKIKRKIED SKVTLRTVRK 120
  121 QMMDKLEKFK NKIGKDIYFK QKNYIQSIHD QTKKNIEKLF ADTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	1ek8A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.838193922019645	bayes_pls_golite062009
translation regulator activity	0.51099545903621	bayes_pls_golite062009
nucleic acid binding	0.44053908101724	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.32761172237831	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: