YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124806981, gi...
Organism:	Plasmodium falciparum 3D7
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124806981, gi....

Description	E-value	Query Range	Subject Range
CUTA - cutA divalent cation tolerance homolog (E. coli)	182.0	[0..39]	[159..51]
gi\|109070772 - gi\|109070772\|ref\|XP_001116293.1\| PREDICTED: cutA divalent cation tolerance homolog (E. coli) isoform...	182.0	[0..39]	[159..51]
gi\|114606922 - gi\|114606922\|ref\|XP_001171110.1\| PREDICTED: cutA divalent cation tolerance homolog isoform 7 [Pan tr...	181.0	[0..39]	[159..51]
gi\|46579402, gi\|... - gi\|46579402\|ref\|YP_010210.1\| periplasmic divalent cation tolerance protein cutA, putative [Desulfovi... gi\|241908348, gi... - gi\|241908348\|ref\|ZP_04792918.1\| CutA1 divalent ion tolerance protein [Desulfovibrio vulgaris RCH1], ...	178.0	[0..31]	[157..14]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAEKRCNKL KSYPFFLNHI IHFNKLTKNN CFNKYKNKSQ PKYHIKSNME KHDSPFIVVY  60
   61 VTTPSKEVAE KISYVLLEEK LVSCVNVIPG ILSLYHWKGE IAKDNEVLMM IKTKKHLFDE 120
  121 IVKLVKSNHP YEIPEVIAVP IEYGSKDYLD WVNNSVKQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	1xk8A
Description:	Divalent cation tolerant protein CUTA from Homo sapiens O60888
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.00383441309208	bayes_pls_golite062009
transcription regulator activity	0.582366961716094	bayes_pls_golite062009
protein binding	0.305475756875782	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: