YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115348264, gi...
Organism:	Yersinia pestis CO92
Length:	717 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115348264, gi....

Description	E-value	Query Range	Subject Range
gi\|49612489, gi\|... - gi\|50121963\|ref\|YP_051130.1\| phosphate acetyltransferase [Pectobacterium atrosepticum SCRI1043], gi\|...	0.0	[1..711]	[1..711]
gi\|224467701, gi... - gi\|224583174\|ref\|YP_002636972.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pta] [protein=phosphate acetyltransferase] [protein_id=YP_005238418.1] [location=2500770..2502... gi\|204929238, gi... - gi\|204929238\|ref\|ZP_03220381.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|207857756, gi... - gi\|207857756\|ref\|YP_002244407.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|198243957, gi... - gi\|198243957\|ref\|YP_002216409.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|199603748, gi... - gi\|200386650\|ref\|ZP_03213262.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. ent... gi\|238912383 - gi\|238912383\|ref\|ZP_04656220.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|197248002, gi... - gi\|197248002\|ref\|YP_002147298.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|197265259, gi... - gi\|197265259\|ref\|ZP_03165333.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194471410, gi... - gi\|194471410\|ref\|ZP_03077394.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194713110, gi... - gi\|194737608\|ref\|YP_002115408.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium GN=pta PE=1 SV=1 PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pta P... gi\|194402543, gi... - gi\|194443880\|ref\|YP_002041600.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|194448796, gi... - gi\|194448796\|ref\|YP_002046393.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|168465954, gi... - gi\|195631250\|gb\|EDX49810.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168817927, gi... - gi\|205344733\|gb\|EDZ31497.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|62180909, gi\|... - gi\|62180909\|ref\|YP_217326.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|205338663, gi... - gi\|205338663\|gb\|EDZ25427.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205349317, gi... - gi\|205349317\|gb\|EDZ35948.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168229712, gi... - gi\|205335916\|gb\|EDZ22680.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. enteric... gi\|197289725, gi... - gi\|197289725\|gb\|EDY29088.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205325221, gi... - gi\|205325221\|gb\|EDZ13060.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|167994690, gi... - gi\|205327484\|gb\|EDZ14248.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|161612930, gi... - gi\|161612930\|ref\|YP_001586895.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se...	0.0	[1..714]	[1..714]
gi\|56412765, gi\|... - gi\|56412765\|ref\|YP_149840.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|214002012 - gi\|214002012\|ref\|ZP_03412747.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|29141041, gi\|... - gi\|29141041\|ref\|NP_804383.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|213427003 - gi\|213427003\|ref\|ZP_03359753.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|16761263 - gi\|16761263\|ref\|NP_456880.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|197093175, gi... - gi\|197361699\|ref\|YP_002141335.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|25321719, gi\|... - gi\|25321719\|pir\|\|AH0798 phosphate acetyltransferase (EC 2.3.1.8) [imported] - Salmonella enterica su...	0.0	[1..714]	[1..714]
gi\|82777705, gi\|... - gi\|82777705\|ref\|YP_404054.1\| phosphate acetyltransferase [Shigella dysenteriae Sd197], gi\|81241853\|g...	0.0	[1..713]	[1..714]
gi\|218428021, gi... - gi\|218690457\|ref\|YP_002398669.1\| phosphate acetyltransferase [Escherichia coli ED1a], gi\|218428021\|e... gi\|218559210, gi... - gi\|218559210\|ref\|YP_002392123.1\| phosphate acetyltransferase [Escherichia coli S88], gi\|218365979\|em... gi\|91211593, gi\|... - gi\|91211593\|ref\|YP_541579.1\| phosphate acetyltransferase [Escherichia coli UTI89], gi\|91073167\|gb\|AB... gi\|26248686, gi\|... - gi\|26248686\|ref\|NP_754726.1\| phosphate acetyltransferase [Escherichia coli CFT073], gi\|26109091\|gb\|A...	0.0	[1..713]	[1..714]
gi\|110642501, gi... - gi\|110642501\|ref\|YP_670231.1\| phosphate acetyltransferase [Escherichia coli 536], gi\|110344093\|gb\|AB... gi\|191170103, gi... - gi\|191170103\|ref\|ZP_03031657.1\| phosphate acetyltransferase [Escherichia coli F11], gi\|190909619\|gb\|...	0.0	[1..713]	[1..714]
gi\|209765002, gi... - pir\|\|E91026 phosphotransacetylase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509... gi\|12516653, gi\|... - gi\|15802844\|ref\|NP_288871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7], gi\|13362651\|dbj... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|208819968, gi... - gi\|208819968\|ref\|ZP_03260288.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4042], ... gi\|209159857, gi... - gi\|209398457\|ref\|YP_002271706.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4115],... gi\|217327241, gi... - gi\|217327241\|ref\|ZP_03443324.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14588],... gi\|218705827, gi... - gi\|218705827\|ref\|YP_002413346.1\| phosphate acetyltransferase [Escherichia coli UMN026], gi\|218432924... gi\|189405670, gi... - gi\|189405670\|ref\|ZP_02823477.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC508], g... gi\|195935676 - gi\|195935676\|ref\|ZP_03081058.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|208728335, gi... - gi\|208808534\|ref\|ZP_03250871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4206], ... gi\|208733710, gi... - gi\|208812433\|ref\|ZP_03253762.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4045], ... gi\|189357739, gi... - gi\|189402105\|ref\|ZP_02780059.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4401], ... gi\|189403068, gi... - gi\|189403068\|ref\|ZP_02792933.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4486], ... gi\|189403966, gi... - gi\|189403966\|ref\|ZP_02786268.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4501], ... gi\|189372882, gi... - gi\|189404943\|ref\|ZP_02812214.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC869], g... gi\|254593590, gi... - gi\|254794190\|ref\|YP_003079027.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14359]... gi\|187771320, gi... - gi\|187775769\|ref\|ZP_02797981.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4196], ... gi\|188024704, gi... - gi\|188024704\|ref\|ZP_02773171.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4113], ... gi\|189001885, gi... - gi\|189010142\|ref\|ZP_02805162.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4076], ...	0.0	[1..713]	[1..714]
gi\|218352628, gi... - gi\|218695896\|ref\|YP_002403563.1\| phosphate acetyltransferase [Escherichia coli 55989], gi\|218352628\|... gi\|218554854, gi... - gi\|218554854\|ref\|YP_002387767.1\| phosphate acetyltransferase [Escherichia coli IAI1], gi\|218361622\|e... gi\|188493696, gi... - gi\|188493696\|ref\|ZP_03000966.1\| phosphate acetyltransferase [Escherichia coli 53638], gi\|188488895\|g... gi\|74312814, gi\|... - gi\|74312814\|ref\|YP_311233.1\| phosphate acetyltransferase [Shigella sonnei Ss046], gi\|73856291\|gb\|AAZ... gi\|187428070, gi... - gi\|187731078\|ref\|YP_001881118.1\| phosphate acetyltransferase [Shigella boydii CDC 3083-94], gi\|18742... gi\|170081913, gi... - gi\|170081913\|ref\|YP_001731233.1\| phosphate acetyltransferase [Escherichia coli str. K-12 substr. DH1... gi\|170019394, gi... - gi\|170019394\|ref\|YP_001724348.1\| phosphate acetyltransferase [Escherichia coli ATCC 8739], gi\|169754... gi\|194436108, gi... - gi\|194436108\|ref\|ZP_03068210.1\| phosphate acetyltransferase [Escherichia coli 101-1], gi\|194424836\|g... gi\|192958498, gi... - gi\|193068219\|ref\|ZP_03049183.1\| phosphate acetyltransferase [Escherichia coli E110019], gi\|192958498... gi\|89109117, gi\|... - gi\|89109117\|ref\|AP_002897.1\| phosphate acetyltransferase [Escherichia coli str. K-12 substr. W3110],... gi\|193062345, gi... - gi\|193062345\|ref\|ZP_03043440.1\| phosphate acetyltransferase [Escherichia coli E22], gi\|192932011\|gb\|... gi\|124501933, gi... - gi\|124526462\|ref\|ZP_01698415.1\| phosphate acetyltransferase [Escherichia coli B], gi\|124501933\|gb\|EA... gi\|191166525, gi... - gi\|191166525\|ref\|ZP_03028355.1\| phosphate acetyltransferase [Escherichia coli B7A], gi\|190903485\|gb\|... PTA_SHIFL - Phosphate acetyltransferase OS=Shigella flexneri GN=pta PE=3 SV=2 gi\|157161785, gi... - gi\|157161785\|ref\|YP_001459103.1\| phosphate acetyltransferase [Escherichia coli HS], gi\|157067465\|gb\|... PTA_ECOLI - Phosphate acetyltransferase (EC 2.3.1.8) (Phosphotransacetylase) - Escherichia coli gi\|157158227, gi... - gi\|157158227\|ref\|YP_001463641.1\| phosphate acetyltransferase [Escherichia coli E24377A], gi\|15708025... EG20173 - phosphate acetyltransferase / Phosphate acetyltransferase, produces acetyl phosphate; creBC regulon;... gi\|24052735, gi\|... - gi\|24113669\|ref\|NP_708179.1\| phosphate acetyltransferase [Shigella flexneri 2a str. 301], gi\|2405273... gi\|30041978, gi\|... - gi\|30063723\|ref\|NP_837894.1\| phosphate acetyltransferase [Shigella flexneri 2a str. 2457T], gi\|30041... gi\|110806260, gi... - gi\|110806260\|ref\|YP_689780.1\| phosphate acetyltransferase [Shigella flexneri 5 str. 8401], gi\|110615... EG20173 - phosphate acetyltransferase / Phosphate acetyltransferase, produces acetyl phosphate; creBC regulon;... gi\|238862023, gi... - gi\|238901472\|ref\|YP_002927268.1\| phosphate acetyltransferase [Escherichia coli BW2952], gi\|238862023... gi\|253772779, gi... - gi\|254289067\|ref\|YP_003054815.1\| phosphate acetyltransferase [Escherichia coli BL21(DE3)], gi\|253978... gi\|251785657, gi... - gi\|251785657\|ref\|YP_002999961.1\| hypothetical protein B21_02182 [Escherichia coli BL21], gi\|24237793... gi\|254162306, gi... - gi\|254162306\|ref\|YP_003045414.1\| phosphate acetyltransferase [Escherichia coli B str. REL606], gi\|25...	0.0	[1..713]	[1..714]
gi\|89105761 - gi\|89105761\|ref\|ZP_01178275.1\| COG0857: BioD-like N-terminal domain of phosphotransacetylase [Yersin... gi\|167056392, gi... - gi\|167424510\|ref\|ZP_02316263.1\| phosphate acetyltransferase [Yersinia pestis biovar Mediaevalis str.... gi\|77629646, gi\|... - gi\|77629646\|ref\|ZP_00792232.1\| COG0857: BioD-like N-terminal domain of phosphotransacetylase [Yersin... gi\|77636561 - gi\|77636561\|ref\|ZP_00798634.1\| COG0857: BioD-like N-terminal domain of phosphotransacetylase [Yersin...	0.0	[6..717]	[1..712]
gi\|238717158, gi... - gi\|77960598\|ref\|ZP_00824462.1\| COG0857: BioD-like N-terminal domain of phosphotransacetylase [Yersin...	0.0	[6..715]	[1..710]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTIMLIPT GTSVGLTSVS LGVIRSMEQK GVSLSVFKPI AQPRAGNDAP DQTTTIIRAN  60
   61 SSITAAEPLN MNYVETLLSS NQQDVLMEEI VARYHENTKD AEVVLVEGLV PTRKHQFANA 120
  121 LNYEIAKTLN AEIVFVIALG NDSPDQLKER IELARSSFGG SKNKNITGVI INKLNAPVDE 180
  181 QGRTRPDLSE IFDDSTKASV ANIDPSQLFA NSPIPVLGCV PWSFELIATR AIDMAKHLNA 240
  241 RIINEGDIKT RRVKSVTFCA RSIPHMLEHF RPGSLLVTSA DRPDVLVSAC LAAMNGVEIG 300
  301 AILLTGGYAI DDRINNLCER AFQTGLPVFM VDTNTWQTSL SLQSFNLEVP ADDHERVEKL 360
  361 QNYVASHISS EWIDSLTAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2a9fA
Description:	Crystal structure of a putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating))
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [381-717]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERPRRLSPPA FRYELTELAR KAGKRIVLPE GDEPRTIKAA SICAERGIAT CVLLGNPEEI  60
   61 QRVATSQGVE LGKGVEIIDP VAVREQYVPR LVELRKSKGM TEVVAREQLE DNVVLGTLML 120
  121 EKGEVDGLVS GAVHTTANTI RPPLQLIKTA PGSSLVSSVF FMLLPDQVLV YGDCAINPDP 180
  181 TAEQLSEIAI QSADSAAAFG IEPRVAMISY STGNSGAGSD VEKVREATRL AQEKRPDLII 240
  241 DGPLQYDAAI MADVAKSKAP NSPVAGRATV FIFPDLNTGN TTYKAVQRSA DLISIGPMLQ 300
  301 GMRKPVNDLS RGALVDDIVY TVALTAIQSA QADSAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.30103
Match:	1r5jA
Description:	Crystal Structure of a Phosphotransacetylase from Streptococcus pyogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	4.07470589461733	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	2.76980877987445	bayes_pls_golite062009
catalytic activity	2.71251959637136	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	2.37654914320201	bayes_pls_golite062009
oxidoreductase activity	1.34383793575786	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.23338300186555	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.23134321553105	bayes_pls_golite062009
acetyltransferase activity	0.475874744828042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: