YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45436374, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45436374, gi|....

Description	E-value	Query Range	Subject Range
Q66B27\|Q66B27_YERPS - Putative acetyltransferase - Yersinia pseudotuberculosis gi\|51589561, gi\|... - gi\|51596279\|ref\|YP_070470.1\| putative acetyltransferase [Yersinia pseudotuberculosis IP 32953], gi\|5... gi\|186895314, gi... - gi\|186895314\|ref\|YP_001872426.1\| GCN5-related N-acetyltransferase [Yersinia pseudotuberculosis PB1/+...	1.0E-70	[1..299]	[1..299]
gi\|77970064, gi\|... - gi\|78062179\|ref\|YP_372087.1\| GCN5-related N-acetyltransferase [Burkholderia sp. 383], gi\|77970064\|gb...	2.0E-45	[58..298]	[11..251]
gi\|67548654, gi\|... - gi\|67548654\|ref\|ZP_00426538.1\| GCN5-related N-acetyltransferase [Burkholderia vietnamiensis G4], gi\|...	2.0E-45	[56..299]	[56..299]
gi\|150840040, gi... - gi\|75429725\|ref\|ZP_00732387.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	6.0E-45	[64..294]	[1..228]
gi\|67099736, gi\|... - gi\|67666724\|ref\|ZP_00463966.1\| GCN5-related N-acetyltransferase [Burkholderia cenocepacia HI2424], g... gi\|67094672, gi\|... - gi\|67657618\|ref\|ZP_00454995.1\| GCN5-related N-acetyltransferase [Burkholderia cenocepacia AU 1054], ...	9.0E-45	[66..299]	[19..252]
gi\|145598462, gi... - gi\|145598462\|ref\|YP_001162538.1\| acetyltransferase [Yersinia pestis Pestoides F], gi\|145210158\|gb\|AB... gi\|152960308, gi... - gi\|153948813\|ref\|YP_001401100.1\| acetyltransferase [Yersinia pseudotuberculosis IP 31758], gi\|152960... gi\|108807334, gi... - gi\|108807334\|ref\|YP_651250.1\| putative acetyltransferase [Yersinia pestis Antiqua], gi\|108779247\|gb\|...	2.0E-44	[64..299]	[1..236]
gi\|23094673, gi\|... - gi\|25010321\|ref\|NP_734716.1\| GNAT family acetyltransferase [Streptococcus agalactiae NEM316], gi\|230...	2.0E-44	[64..297]	[1..233]
gi\|115358701, gi... - gi\|115358701\|ref\|YP_775839.1\| GCN5-related N-acetyltransferase [Burkholderia ambifaria AMMD], gi\|115...	2.0E-44	[58..294]	[11..247]
gi\|24377226, gi\|... - gi\|24379305\|ref\|NP_721260.1\| hypothetical protein SMU.850 [Streptococcus mutans UA159], gi\|24377226\|... gi\|254997590 - gi\|254997590\|dbj\|BAH88191.1\| hypothetical protein [Streptococcus mutans NN2025]	3.0E-44	[64..294]	[1..231]
gi\|84354578 - gi\|84354578\|ref\|ZP_00979481.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot...	6.0E-44	[66..299]	[5..238]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGHAAYYGV LGQMNRGALW EGKYPTCAVV YNNVIYIAML FAALLLFLNN GYHFSDDIKR  60
   61 EHSVKQNPFG QTIGAELPYW HLARPPQREI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPGHFCSLEP VSADKHEASL YQAYHAVSDG QDWTYFYCER PENKDDFHHY LQTLIHANDA  60
   61 VHYTAVDPQL GHALGTVGLQ RIDEKNGVIE IGSVNWSPRL KRNTAGTEAI YLLLHYAFDK 120
  121 LGYRRCEWKC DSLNESSNAA AARFGFQYEG QFRQAIVTKG RNRDTNWYAI IDKDWPLIKQ 180
  181 AFKDWLMAEN FDSQGKQKVR LQDLRGRHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1nslA
Description:	Probable acetyltransferase YdaF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.97933499002461	bayes_pls_golite062009
transferase activity	1.72447231774431	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.42711272311757	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.24328242407788	bayes_pls_golite062009
acyltransferase activity	1.2338745976101	bayes_pls_golite062009
N-acyltransferase activity	0.890897647236405	bayes_pls_golite062009
acetyltransferase activity	0.823367673029436	bayes_pls_golite062009
N-acetyltransferase activity	0.498634717186713	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: