YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45436374, gi\|...
Organism:	Yersinia pestis biovar Microtus str. 91001
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45436374, gi|....

Description	E-value	Query Range	Subject Range
Q66B27\|Q66B27_YERPS - Putative acetyltransferase - Yersinia pseudotuberculosis gi\|51589561, gi\|... - gi\|51596279\|ref\|YP_070470.1\| putative acetyltransferase [Yersinia pseudotuberculosis IP 32953], gi\|5... gi\|186895314, gi... - gi\|186895314\|ref\|YP_001872426.1\| GCN5-related N-acetyltransferase [Yersinia pseudotuberculosis PB1/+...	1.0E-70	[1..299]	[1..299]
gi\|77970064, gi\|... - gi\|78062179\|ref\|YP_372087.1\| GCN5-related N-acetyltransferase [Burkholderia sp. 383], gi\|77970064\|gb...	2.0E-45	[58..298]	[11..251]
gi\|67548654, gi\|... - gi\|67548654\|ref\|ZP_00426538.1\| GCN5-related N-acetyltransferase [Burkholderia vietnamiensis G4], gi\|...	2.0E-45	[56..299]	[56..299]
gi\|150840040, gi... - gi\|75429725\|ref\|ZP_00732387.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	6.0E-45	[64..294]	[1..228]
gi\|67099736, gi\|... - gi\|67666724\|ref\|ZP_00463966.1\| GCN5-related N-acetyltransferase [Burkholderia cenocepacia HI2424], g... gi\|67094672, gi\|... - gi\|67657618\|ref\|ZP_00454995.1\| GCN5-related N-acetyltransferase [Burkholderia cenocepacia AU 1054], ...	9.0E-45	[66..299]	[19..252]
gi\|145598462, gi... - gi\|145598462\|ref\|YP_001162538.1\| acetyltransferase [Yersinia pestis Pestoides F], gi\|145210158\|gb\|AB... gi\|152960308, gi... - gi\|153948813\|ref\|YP_001401100.1\| acetyltransferase [Yersinia pseudotuberculosis IP 31758], gi\|152960... gi\|108807334, gi... - gi\|108807334\|ref\|YP_651250.1\| putative acetyltransferase [Yersinia pestis Antiqua], gi\|108779247\|gb\|...	2.0E-44	[64..299]	[1..236]
gi\|23094673, gi\|... - gi\|25010321\|ref\|NP_734716.1\| GNAT family acetyltransferase [Streptococcus agalactiae NEM316], gi\|230...	2.0E-44	[64..297]	[1..233]
gi\|115358701, gi... - gi\|115358701\|ref\|YP_775839.1\| GCN5-related N-acetyltransferase [Burkholderia ambifaria AMMD], gi\|115...	2.0E-44	[58..294]	[11..247]
gi\|24377226, gi\|... - gi\|24379305\|ref\|NP_721260.1\| hypothetical protein SMU.850 [Streptococcus mutans UA159], gi\|24377226\|... gi\|254997590 - gi\|254997590\|dbj\|BAH88191.1\| hypothetical protein [Streptococcus mutans NN2025]	3.0E-44	[64..294]	[1..231]
gi\|84354578 - gi\|84354578\|ref\|ZP_00979481.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot...	6.0E-44	[66..299]	[5..238]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGHAAYYGV LGQMNRGALW EGKYPTCAVV YNNVIYIAML FAALLLFLNN GYHFSDDIKR  60
   61 EHSVKQNPFG QTIGAELPYW HLARPPQREI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.220	a.5.2	UBA-like

Predicted Domain #2

Region A:
Residues: [91-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPGHFCSLEP VSADKHEASL YQAYHAVSDG QDWTYFYCER PENKDDFHHY LQTLIHANDA  60
   61 VHYTAVDPQL GHALGTVGLQ RIDEKNGVIE IGSVNWSPRL KRNTAGTEAI YLLLHYAFDK 120
  121 LGYRRCEWKC DSLNESSNAA AARFGFQYEG QFRQAIVTKG RNRDTNWYAI IDKDWPLIKQ 180
  181 AFKDWLMAEN FDSQGKQKVR LQDLRGRHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1nslA
Description:	Probable acetyltransferase YdaF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.97933499002461	bayes_pls_golite062009
transferase activity	1.72447231774431	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.42711272311757	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.24328242407788	bayes_pls_golite062009
acyltransferase activity	1.2338745976101	bayes_pls_golite062009
N-acyltransferase activity	0.890897647236405	bayes_pls_golite062009
acetyltransferase activity	0.823367673029436	bayes_pls_golite062009
N-acetyltransferase activity	0.498634717186713	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: