YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144111, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144111, gi|....

Description	E-value	Query Range	Subject Range
gi\|62129814, gi\|... - gi\|62182181\|ref\|YP_218598.1\| mannitol repressor protein [Salmonella enterica subsp. enterica serovar...	2.0E-81	[1..196]	[1..196]
gi\|189380010, gi... - gi\|189380010\|gb\|EDU98426.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|169753096, gi... - gi\|170018168\|ref\|YP_001723122.1\| mannitol repressor protein [Escherichia coli ATCC 8739], gi\|1697530... gi\|195935127 - gi\|195935127\|ref\|ZP_03080509.1\| mannitol repressor protein [Escherichia coli O157:H7 str. EC4024] gi\|208808988, gi... - gi\|208808988\|ref\|ZP_03251325.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4206], gi... gi\|208734676, gi... - gi\|208813399\|ref\|ZP_03254728.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4045], gi... gi\|208740816, gi... - gi\|208820693\|ref\|ZP_03261013.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4042], gi... gi\|209400358, gi... - gi\|209400358\|ref\|YP_002273080.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4115], g... gi\|209914330, gi... - gi\|209921071\|ref\|YP_002295155.1\| mannitol repressor protein [Escherichia coli SE11], gi\|209914330\|db... gi\|188018342, gi... - gi\|188018342\|gb\|EDU56464.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189359136, gi... - gi\|189359136\|gb\|EDU77555.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|168759692, gi... - gi\|189369530\|gb\|EDU87946.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189364738, gi... - gi\|189364738\|gb\|EDU83157.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|187771605, gi... - gi\|187771605\|gb\|EDU35449.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189002515, gi... - gi\|189002515\|gb\|EDU71501.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168785472, gi... - gi\|189374674\|gb\|EDU93090.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|157080978, gi... - gi\|75188364\|ref\|ZP_00701631.1\| COG3722: Transcriptional regulator [Escherichia coli E24377A], gi\|157... gi\|75211356, gi\|... - gi\|75211356\|ref\|ZP_00711455.1\| COG3722: Transcriptional regulator [Escherichia coli B171], gi\|194427... gi\|194431208, gi... - gi\|83571591\|ref\|ZP_00923031.1\| COG3722: Transcriptional regulator [Shigella dysenteriae 1012], gi\|19... gi\|192926272, gi... - gi\|75255817\|ref\|ZP_00727563.1\| COG3722: Transcriptional regulator [Escherichia coli E22], gi\|1930661... gi\|73857642, gi\|... - gi\|74314165\|ref\|YP_312584.1\| mannitol repressor protein [Shigella sonnei Ss046], gi\|73857642\|gb\|AAZ9... gi\|254594955, gi... - gi\|254795555\|ref\|YP_003080392.1\| DNA-binding repressor [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|190901815, gi... - gi\|75228664\|ref\|ZP_00715285.1\| COG3722: Transcriptional regulator [Escherichia coli B7A], gi\|1911681... gi\|193068493, gi... - gi\|75237541\|ref\|ZP_00721574.1\| COG3722: Transcriptional regulator [Escherichia coli E110019], gi\|193... gi\|217321259, gi... - gi\|217325038\|ref\|ZP_03441122.1\| mannitol operon repressor [Escherichia coli O157:H7 str. TW14588], g... gi\|218362931, gi... - gi\|218556163\|ref\|YP_002389076.1\| mannitol repressor protein [Escherichia coli IAI1], gi\|218362931\|em... gi\|218354054, gi... - gi\|218697322\|ref\|YP_002404989.1\| mannitol repressor protein [Escherichia coli 55989], gi\|218354054\|e... gi\|15833731, gi\|... - gi\|15833731\|ref\|NP_312504.1\| repressor for mtl [Escherichia coli O157:H7], gi\|13363952\|dbj\|BAB37900.... gi\|25391649, gi\|... - pir\|\|E86035 repressor for mtl [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pir... gi\|12518345, gi\|... - gi\|15804142\|ref\|NP_290181.1\| mannitol repressor protein [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|15833731, gi\|... - gi\|15833731\|ref\|NP_312504.1\| mannitol repressor protein [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|124499169, gi... - gi\|124530528\|ref\|ZP_01701155.1\| mannitol repressor, MtlR [Escherichia coli B], gi\|124499169\|gb\|EAY46...	1.0E-78	[6..196]	[5..195]
gi\|215488880, gi... - gi\|215488880\|ref\|YP_002331311.1\| mannitol repressor protein [Escherichia coli O127:H6 str. E2348/69]... gi\|170518176, gi... - gi\|170680458\|ref\|YP_001745899.1\| mannitol operon repressor [Escherichia coli SMS-3-5], gi\|170518176\|... gi\|218691884, gi... - gi\|218691884\|ref\|YP_002400096.1\| mannitol repressor protein [Escherichia coli ED1a], gi\|218429448\|em... gi\|91213112, gi\|... - gi\|91213112\|ref\|YP_543098.1\| mannitol repressor protein [Escherichia coli UTI89], gi\|91074686\|gb\|ABE... gi\|218367441, gi... - gi\|218560672\|ref\|YP_002393585.1\| mannitol repressor protein [Escherichia coli S88], gi\|218367441\|emb... gi\|218707234, gi... - gi\|218707234\|ref\|YP_002414753.1\| mannitol repressor protein [Escherichia coli UMN026], gi\|218434331\|... gi\|218372352, gi... - gi\|218702366\|ref\|YP_002409995.1\| mannitol repressor protein [Escherichia coli IAI39], gi\|218372352\|e... MTLR_ECOL6 - Mannitol operon repressor OS=Escherichia coli O6 GN=mtlR PE=3 SV=1 gi\|115515001, gi... - gi\|117625877\|ref\|YP_859200.1\| mannitol repressor protein [Escherichia coli APEC O1], gi\|115515001\|gb... MTLR_ECOL6 - Mannitol operon repressor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mtlR PE=... EG11965 - mannitol operon repressor / Mannitol operon repressor gi\|110345434, gi... - gi\|110643842\|ref\|YP_671572.1\| mannitol repressor protein [Escherichia coli 536], gi\|110345434\|gb\|ABG... EG11965 - mannitol operon repressor / Mannitol operon repressor gi\|110807729, gi... - gi\|110807729\|ref\|YP_691249.1\| mannitol repressor protein [Shigella flexneri 5 str. 8401], gi\|1106172... gi\|170083108, gi... - gi\|170083108\|ref\|YP_001732428.1\| DNA-binding repressor [Escherichia coli str. K-12 substr. DH10B], g... gi\|157163080, gi... - gi\|75197508\|ref\|ZP_00707578.1\| COG3722: Transcriptional regulator [Escherichia coli HS], gi\|15716308... gi\|191170590, gi... - gi\|75242616\|ref\|ZP_00726360.1\| COG3722: Transcriptional regulator [Escherichia coli F11], gi\|1911705... gi\|188496309, gi... - gi\|75514332\|ref\|ZP_00736640.1\| COG3722: Transcriptional regulator [Escherichia coli 53638], gi\|18849... gi\|81247372, gi\|... - gi\|82545961\|ref\|YP_409908.1\| mannitol repressor protein [Shigella boydii Sb227], gi\|81247372\|gb\|ABB6... gi\|89110411, gi\|... - gi\|89110411\|ref\|AP_004191.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 subst... MTLR_ECOLI - Mannitol operon repressor (Mannitol repressor protein) - Escherichia coli gi\|227883766, gi... - gi\|227883766\|ref\|ZP_04001571.1\| DNA-binding repressor [Escherichia coli 83972], gi\|227839346\|gb\|EEJ4... gi\|226902632, gi... - gi\|237703368\|ref\|ZP_04533849.1\| repressor for mtl [Escherichia sp. 3_2_53FAA], gi\|226902632\|gb\|EEH88... gi\|238902691, gi... - gi\|238902691\|ref\|YP_002928487.1\| DNA-binding repressor [Escherichia coli BW2952], gi\|238860853\|gb\|AC... gi\|83588547, gi\|... - gi\|83588547\|ref\|ZP_00927171.1\| COG3722: Transcriptional regulator [Escherichia coli 101-1], gi\|19443... gi\|242379122, gi... - gi\|251786849\|ref\|YP_003001153.1\| hypothetical protein B21_03407 [Escherichia coli BL21], gi\|24237912... gi\|187428698, gi... - gi\|75179768\|ref\|ZP_00699755.1\| COG3722: Transcriptional regulator [Shigella boydii BS512], gi\|187731... gi\|253771559, gi... - gi\|254290278\|ref\|YP_003056026.1\| DNA-binding repressor [Escherichia coli BL21(DE3)], gi\|253979585\|gb... gi\|254038800, gi... - gi\|254038800\|ref\|ZP_04872852.1\| repressor for mtl [Escherichia sp. 1_1_43], gi\|226838765\|gb\|EEH70792... gi\|254163528, gi... - gi\|254163528\|ref\|YP_003046636.1\| DNA-binding repressor [Escherichia coli B str. REL606], gi\|25397542...	2.0E-78	[6..196]	[5..195]
gi\|5566392 - gi\|5566392\|gb\|AAD45387.1\|AF166095_3 mtl operon repressor [Klebsiella pneumoniae] gi\|206569580, gi... - gi\|206580522\|ref\|YP_002236035.1\| mannitol operon repressor [Klebsiella pneumoniae 342], gi\|206569580...	9.0E-78	[3..196]	[2..195]
gi\|24054101, gi\|... - gi\|24114865\|ref\|NP_709375.1\| mannitol repressor protein [Shigella flexneri 2a str. 301], gi\|24054101... gi\|30043386, gi\|... - gi\|30065125\|ref\|NP_839296.1\| mannitol repressor protein [Shigella flexneri 2a str. 2457T], gi\|300433...	1.0E-77	[6..196]	[5..195]
gi\|77959633, gi\|... - gi\|77959633\|ref\|ZP_00823651.1\| COG3722: Transcriptional regulator [Yersinia bercovieri ATCC 43970], ...	9.0E-65	[22..192]	[1..174]
gi\|238727556, gi... - gi\|77978092\|ref\|ZP_00833526.1\| COG3722: Transcriptional regulator [Yersinia intermedia ATCC 29909], ...	1.0E-64	[22..192]	[1..174]
gi\|238798349, gi... - gi\|77960732\|ref\|ZP_00824591.1\| COG3722: Transcriptional regulator [Yersinia mollaretii ATCC 43969], ...	1.0E-64	[22..192]	[1..174]
gi\|37678687, gi\|... - gi\|37678687\|ref\|NP_933296.1\| mannitol repressor protein [Vibrio vulnificus YJ016], gi\|37197427\|dbj\|B...	1.0E-64	[19..194]	[2..180]
gi\|238787793, gi... - gi\|77973742\|ref\|ZP_00829287.1\| COG3722: Transcriptional regulator [Yersinia frederiksenii ATCC 33641...	2.0E-64	[22..192]	[1..174]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQNPAQVSL RPNNRLSDMQ AIMEQTQAFE NRVLERLNAG KTVRSFLITA VELLTEAVNI  60
   61 LVLQVFRKDD YAVKYAVEPL LDGDGPLGDL SVRLKLIYGL GVLSRTEYED AELLMALREE 120
  121 LNHDGNEYAF TDDEILGPFG ELHCVMALPP PPHFDTSDAA LYAMQIQRYQ QAVRSTMVLS 180
  181 LTELISKISL KKAFQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2hktA
Description:	No description for 2hktA was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.76728328288819	bayes_pls_golite062009
nucleic acid binding	1.3981494081148	bayes_pls_golite062009
DNA binding	1.34753445366139	bayes_pls_golite062009
transcription factor activity	1.15951423643663	bayes_pls_golite062009
binding	0.923764328759134	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: