YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16762063
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16762063.

Description	E-value	Query Range	Subject Range
OBG_ACTSZ - GTPase Obg OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=obg PE=3 SV=1	5.0E-75	[1..390]	[1..388]
YHBZ_ECOLI - Hypothetical GTP-binding protein yhbZ - Escherichia coli EG12795 - GTPase involved in cell partioning and DNA repair / DNA-binding GTPase involved in cell partioning a... gi\|89109946, gi\|... - gi\|89109946\|ref\|AP_003726.1\| GTPase involved in cell partioning and DNA repair [Escherichia coli str... OBG_ECODH - GTPase Obg OS=Escherichia coli (strain K12 / DH10B) GN=obg PE=3 SV=1 gi\|238902285, gi... - gi\|238902285\|ref\|YP_002928081.1\| GTPase involved in cell partioning and DNA repair [Escherichia coli... EG12795 - GTPase involved in cell partioning and DNA repair / DNA-binding GTPase involved in cell partioning a...	1.0E-74	[1..390]	[1..390]
gi\|188491854, gi... - gi\|75510980\|ref\|ZP_00733739.1\| COG0536: Predicted GTPase [Escherichia coli 53638], gi\|188491854\|ref\|... gi\|191174476, gi... - gi\|75236237\|ref\|ZP_00720347.1\| COG0536: Predicted GTPase [Escherichia coli F11], gi\|191174476\|ref\|ZP... gi\|189374127, gi... - gi\|189374127\|gb\|EDU92543.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|13363535, gi\|... - gi\|15833316\|ref\|NP_312089.1\| GTPase ObgE [Escherichia coli O157:H7 str. Sakai], gi\|13363535\|dbj\|BAB3... gi\|168781327, gi... - gi\|189001085\|gb\|EDU70071.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC4076], gi\|... OBG_ECOL5 - GTPase Obg OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=obg PE=3 SV=1 gi\|208727362, gi... - gi\|208807561\|ref\|ZP_03249898.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC4206],... gi\|195938402 - gi\|195938402\|ref\|ZP_03083784.1\| GTPase ObgE [Escherichia coli O157:H7 str. EC4024] gi\|208742116, gi... - gi\|208821993\|ref\|ZP_03262313.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC4042],... gi\|208735131, gi... - gi\|208813854\|ref\|ZP_03255183.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC4045],... gi\|217320124, gi... - gi\|217327757\|ref\|ZP_03443840.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. TW14588]... OBG_ECO5E - GTPase Obg OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=obg PE=3 SV=1 gi\|168769039, gi... - gi\|189361859\|gb\|EDU80278.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189358740, gi... - gi\|189358740\|gb\|EDU77159.1\| GTP-binding protein Obg/CgtA [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|209758208, gi... - pir\|\|A85982 probable GTP-binding factor yhbZ [imported] - Escherichia coli (strain O157:H7, substrai... OBG_ECO57 - GTPase Obg OS=Escherichia coli O157:H7 GN=obg PE=3 SV=1 OBG_ECOL6 - GTPase Obg OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=obg PE=3 SV=1 OBG_ECO45 - GTPase Obg OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=obg PE=3 SV=1 gi\|12517798, gi\|... - gi\|15803723\|ref\|NP_289757.1\| GTPase ObgE [Escherichia coli O157:H7 EDL933], gi\|12517798\|gb\|AAG58317.... gi\|227887904, gi... - gi\|227887904\|ref\|ZP_04005709.1\| GTP-binding protein [Escherichia coli 83972], gi\|227835300\|gb\|EEJ457... OBG_ECOK1 - GTPase Obg OS=Escherichia coli O1:K1 / APEC GN=obg PE=3 SV=1 gi\|226899105, gi... - gi\|237706065\|ref\|ZP_04536546.1\| GTPase ObgE [Escherichia sp. 3_2_53FAA], gi\|226899105\|gb\|EEH85364.1\|... gi\|254038348, gi... - gi\|254038348\|ref\|ZP_04872406.1\| GTPase ObgE [Escherichia sp. 1_1_43], gi\|226839972\|gb\|EEH71993.1\| GT... gi\|254795132, gi... - gi\|254795132\|ref\|YP_003079969.1\| GTPase involved in cell partioning and DNA repair [Escherichia coli... OBG_ECOL6 - GTPase obg OS=Escherichia coli O6 GN=obg PE=3 SV=1	2.0E-74	[1..390]	[1..390]
OBG_SODGM - GTPase Obg OS=Sodalis glossinidius (strain morsitans) GN=obg PE=3 SV=1	2.0E-74	[1..384]	[1..382]
gi\|238724369, gi... - gi\|77974006\|ref\|ZP_00829549.1\| COG0536: Predicted GTPase [Yersinia frederiksenii ATCC 33641], gi\|238...	2.0E-74	[1..390]	[1..390]
gi\|42630290 - gi\|42630290\|ref\|ZP_00155834.1\| COG0536: Predicted GTPase [Haemophilus influenzae R2846]	3.0E-74	[1..363]	[1..363]
OBG_PASMU - GTPase obg OS=Pasteurella multocida GN=obg PE=3 SV=1 OBG_PASMU - GTPase Obg OS=Pasteurella multocida (strain Pm70) GN=obg PE=3 SV=1	8.0E-74	[1..363]	[1..363]
gi\|145272633, gi... - gi\|145638304\|ref\|ZP_01793914.1\| GTPase ObgE [Haemophilus influenzae PittII], gi\|145272633\|gb\|EDK1254... gi\|46133177 - gi\|46133177\|ref\|ZP_00156739.2\| COG0536: Predicted GTPase [Haemophilus influenzae R2866] OBG_HAEI8 - GTPase Obg OS=Haemophilus influenzae (strain 86-028NP) GN=obg PE=3 SV=1	3.0E-73	[1..362]	[1..362]
OBG_YERPS - GTPase obg OS=Yersinia pseudotuberculosis GN=obg PE=3 SV=1 OBG_YERPB - GTPase Obg OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=obg PE=3 SV=1 OBG_YERPY - GTPase Obg OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=obg PE=3 SV=1 gi\|149288923, gi... - gi\|153997286\|ref\|ZP_02022386.1\| putative GTP-binding protein [Yersinia pestis CA88-4125], gi\|1492889... OBG_YERPP - GTPase Obg OS=Yersinia pestis (strain Pestoides F) GN=obg PE=3 SV=1 gi\|229839162, gi... - gi\|229839162\|ref\|ZP_04459321.1\| GTPase involved in cell partioning and DNA repair [Yersinia pestis b... gi\|229700429, gi... - gi\|229896651\|ref\|ZP_04511818.1\| GTPase involved in cell partioning and DNA repair [Yersinia pestis P... gi\|229899726, gi... - gi\|229899726\|ref\|ZP_04514867.1\| GTPase involved in cell partioning and DNA repair [Yersinia pestis b... OBG_YERPG - GTPase Obg OS=Yersinia pestis bv. Antiqua (strain Angola) GN=obg PE=3 SV=1 OBG_YERP3 - GTPase Obg OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=obg PE=3 SV=1 gi\|165928177, gi... - gi\|165928177\|ref\|ZP_02224009.1\| GTP-binding protein Obg/CgtA [Yersinia pestis biovar Orientalis str.... gi\|166214038, gi... - gi\|166214038\|ref\|ZP_02240073.1\| GTP-binding protein Obg/CgtA [Yersinia pestis biovar Antiqua str. B4... gi\|89104079, gi\|... - gi\|89104079\|ref\|ZP_01176633.1\| COG0536: Predicted GTPase [Yersinia pestis biovar Orientalis str. IP2... gi\|165989718, gi... - gi\|166011334\|ref\|ZP_02232232.1\| GTP-binding protein Obg/CgtA [Yersinia pestis biovar Antiqua str. E1... gi\|167420644, gi... - gi\|167420644\|ref\|ZP_02312397.1\| GTP-binding protein Obg/CgtA [Yersinia pestis biovar Orientalis str.... gi\|167401242, gi... - gi\|167401242\|ref\|ZP_02306742.1\| GTP-binding protein Obg/CgtA [Yersinia pestis biovar Antiqua str. UG... gi\|167470189 - gi\|167470189\|ref\|ZP_02334893.1\| GTP-binding protein Obg/CgtA [Yersinia pestis FV-1] gi\|167057540, gi... - gi\|167423370\|ref\|ZP_02315123.1\| GTP-binding protein Obg/CgtA [Yersinia pestis biovar Mediaevalis str... OBG_YERPE - GTPase Obg OS=Yersinia pestis GN=obg PE=3 SV=1 gi\|45435285, gi\|... - gi\|45440428\|ref\|NP_991967.1\| GTPase ObgE [Yersinia pestis biovar Microtus str. 91001], gi\|45435285\|g... gi\|21957391, gi\|... - gi\|22124589\|ref\|NP_668012.1\| GTPase ObgE [Yersinia pestis KIM], gi\|21957391\|gb\|AAM84263.1\|AE013669_1... gi\|115349134, gi... - gi\|218930523\|ref\|YP_002348398.1\| GTPase ObgE [Yersinia pestis CO92], gi\|16123655\|ref\|NP_406968.1\| pu... OBG_YERPA - GTPase Obg OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=obg PE=3 SV=1 OBG_YERPS - GTPase Obg OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=obg PE=3 SV=1 OBG_YERPN - GTPase Obg OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=obg PE=3 SV=1	3.0E-73	[1..390]	[1..390]
OBG_IDILO - GTPase obg OS=Idiomarina loihiensis GN=obg PE=3 SV=1 OBG_IDILO - GTPase Obg OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=obg PE=3 SV=1	3.0E-73	[1..357]	[1..357]

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Predicted Domain #1

Region A:
Residues: [1-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVDEASIL VVAGDGGNGC VSFRREKYIP KGGPDGGDGG DGGDVWMEAD ENLNTLIDYR  60
   61 FEKSFRAERG QNGASRDCTG KRGKDVTIKV PVGTRVIDQG TGETMGDMTK HGQRLLVAKG 120
  121 GWHGLGNTRF KSSVNRTPRQ KTNGTPGDKR DLLLELMLLA DVGMLGMPNA GKSTFIRAVS 180
  181 AAKPKVADYP FTTLVPSLGV VRMDSEKSFV VADIPGLIEG AAEGAGLGIR FLKHLERCRV 240
  241 LLHLIDIDPI DGSDPVENAR IIIGELEKYS QDLAAKPRWL VFNKIDLMDK SEAEEKAKAI 300
  301 AEALGWEGKY YLISAASQLG VKDLCWDVMT FIIENPIAQA EEAKQPEKVE FMWDDYHRQQ 360
  361 LAEVEEDADD DWDDDWDEDD EEGVEFIYKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1lnzA
Description:	Obg GTP-binding protein N-terminal domain; Obg GTP-binding protein C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.828877635849693	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.724314026597703	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.723703267640935	bayes_pls_golite062009
binding	0.671939534213175	bayes_pls_golite062009
pyrophosphatase activity	0.42243458498398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: