YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25290114, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25290114, gi|....

Description	E-value	Query Range	Subject Range
gi\|189363657, gi... - gi\|189363657\|gb\|EDU82076.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4486], gi\|168766964\|re... gi\|189369341, gi... - gi\|189369341\|gb\|EDU87757.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4501], gi\|168760099\|re... gi\|189358583, gi... - gi\|189358583\|gb\|EDU77002.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4401], gi\|168753909\|re... gi\|168747551, gi... - gi\|188017927\|gb\|EDU56049.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4113], gi\|168747551\|re... gi\|217327513, gi... - gi\|217327513\|ref\|ZP_03443596.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. TW14588], gi\|2173198... gi\|209158459, gi... - gi\|209397059\|ref\|YP_002272437.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4115], gi\|2091584... gi\|15833087, gi\|... - gi\|15833087\|ref\|NP_311860.1\| L-asparaginase II [Escherichia coli O157:H7 str. Sakai], gi\|13363305\|db... gi\|189379870, gi... - gi\|189379870\|gb\|EDU98286.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC508], gi\|168797532\|ref... gi\|189374047, gi... - gi\|189374047\|gb\|EDU92463.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC869], gi\|168785815\|ref... gi\|168781816, gi... - gi\|189000626\|gb\|EDU69612.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4076], gi\|168781816\|re... gi\|187770804, gi... - gi\|187770804\|gb\|EDU34648.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4196], gi\|168773404\|re... gi\|15833087, gi\|... - gi\|15833087\|ref\|NP_311860.1\| periplasmic L-asparaginase II [Escherichia coli O157:H7], gi\|13363305\|d... gi\|208820500, gi... - gi\|208820500\|ref\|ZP_03260820.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4042], gi\|20874062... gi\|25290105, gi\|... - pir\|\|D85953 periplasmic L-asparaginase II [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|208734271, gi... - gi\|208812994\|ref\|ZP_03254323.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4045], gi\|20873427... gi\|254594309, gi... - gi\|254794909\|ref\|YP_003079746.1\| periplasmic L-asparaginase II [Escherichia coli O157:H7 str. TW1435... gi\|208727388, gi... - gi\|208807587\|ref\|ZP_03249924.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4206], gi\|20872738... gi\|15803496, gi\|... - gi\|15803496\|ref\|NP_289529.1\| L-asparaginase II [Escherichia coli O157:H7 EDL933], gi\|12517506\|gb\|AAG... gi\|195937095 - gi\|195937095\|ref\|ZP_03082477.1\| L-asparaginase II [Escherichia coli O157:H7 str. EC4024]	0.0	[1..348]	[1..348]
gi\|24114218, gi\|... - gi\|24114218\|ref\|NP_708728.1\| L-asparaginase II [Shigella flexneri 2a str. 301], gi\|24053366\|gb\|AAN44... gi\|30064278, gi\|... - gi\|30064278\|ref\|NP_838449.1\| L-asparaginase II [Shigella flexneri 2a str. 2457T], gi\|30042535\|gb\|AAP...	0.0	[1..348]	[1..348]
gi\|191171790, gi... - gi\|75241247\|ref\|ZP_00725109.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|82778271, gi\|... - gi\|82778271\|ref\|YP_404620.1\| L-asparaginase II [Shigella dysenteriae Sd197], gi\|81242419\|gb\|ABB63129... gi\|218701671, gi... - gi\|218701671\|ref\|YP_002409300.1\| L-asparaginase II [Escherichia coli IAI39], gi\|218371657\|emb\|CAR194... gi\|224038274 - gi\|224038274\|gb\|ACN38272.1\| L-asparaginase II [Escherichia coli] gi\|110643106, gi... - gi\|110643106\|ref\|YP_670836.1\| L-asparaginase II [Escherichia coli 536], gi\|110344698\|gb\|ABG70935.1\| ... gi\|227834781, gi... - gi\|227888512\|ref\|ZP_04006317.1\| L-asparaginase II [Escherichia coli 83972], gi\|227834781\|gb\|EEJ45247... gi\|218691081, gi... - gi\|218691081\|ref\|YP_002399293.1\| L-asparaginase II [Escherichia coli ED1a], gi\|218428645\|emb\|CAR0957... gi\|254162867, gi... - gi\|254162867\|ref\|YP_003045975.1\| periplasmic L-asparaginase II [Escherichia coli B str. REL606], gi\|... gi\|242378483, gi... - gi\|251786210\|ref\|YP_003000514.1\| hypothetical protein B21_02750 [Escherichia coli BL21], gi\|24237848... gi\|125742693 - gi\|125742693\|gb\|ABN54579.1\| L-asparaginase [Escherichia coli B] gi\|254289627, gi... - gi\|254289627\|ref\|YP_003055375.1\| periplasmic L-asparaginase II [Escherichia coli BL21(DE3)], gi\|2539... gi\|83587645, gi\|... - gi\|83587645\|ref\|ZP_00926272.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[1..348]	[1..348]
gi\|157157301, gi... - gi\|75187681\|ref\|ZP_00700948.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[1..348]	[1..348]
gi\|192959372, gi... - gi\|75239473\|ref\|ZP_00723444.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|192930768, gi... - gi\|75258565\|ref\|ZP_00729987.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|194415557, gi... - gi\|75212421\|ref\|ZP_00712445.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|191167954, gi... - gi\|75228913\|ref\|ZP_00715510.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|74313634, gi\|... - gi\|74313634\|ref\|YP_312053.1\| L-asparaginase II [Shigella sonnei Ss046], gi\|73857111\|gb\|AAZ89818.1\| p... gi\|81246831, gi\|... - gi\|82545420\|ref\|YP_409367.1\| L-asparaginase II [Shigella boydii Sb227], gi\|81246831\|gb\|ABB67539.1\| p... gi\|170682068, gi... - gi\|170682068\|ref\|YP_001745118.1\| L-asparaginase 2 [Escherichia coli SMS-3-5], gi\|170519786\|gb\|ACB179... gi\|209913675, gi... - gi\|209920416\|ref\|YP_002294500.1\| L-asparaginase II [Escherichia coli SE11], gi\|209913675\|dbj\|BAG7874... gi\|170018802, gi... - gi\|170018802\|ref\|YP_001723756.1\| L-asparaginase II [Escherichia coli ATCC 8739], gi\|169753730\|gb\|ACA... gi\|195183150 - gi\|195183150\|dbj\|BAG66695.1\| periplasmic L-asparaginase II [Escherichia coli O111:H-] gi\|218555516, gi... - gi\|218555516\|ref\|YP_002388429.1\| L-asparaginase II [Escherichia coli IAI1], gi\|218362284\|emb\|CAQ9990... gi\|218696555, gi... - gi\|218696555\|ref\|YP_002404222.1\| L-asparaginase II [Escherichia coli 55989], gi\|218353287\|emb\|CAU992... gi\|110806869, gi... - gi\|110806869\|ref\|YP_690389.1\| L-asparaginase II [Shigella flexneri 5 str. 8401], gi\|110616417\|gb\|ABF... gi\|124502247, gi... - gi\|124526143\|ref\|ZP_01698148.1\| L-asparaginases, type II [Escherichia coli B], gi\|124502247\|gb\|EAY49... gi\|254038007, gi... - gi\|254038007\|ref\|ZP_04872065.1\| periplasmic L-asparaginase II [Escherichia sp. 1_1_43], gi\|226839631... gi\|75178857, gi\|... - gi\|75178857\|ref\|ZP_00698893.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157162418, gi... - gi\|75196906\|ref\|ZP_00706976.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[1..348]	[1..348]
gi\|218559948, gi... - gi\|218559948\|ref\|YP_002392861.1\| L-asparaginase II [Escherichia coli S88], gi\|218366717\|emb\|CAR04474... gi\|91212339, gi\|... - gi\|91212339\|ref\|YP_542325.1\| L-asparaginase II [Escherichia coli UTI89], gi\|91073913\|gb\|ABE08794.1\| ... gi\|117625184, gi... - gi\|117625184\|ref\|YP_854172.1\| L-asparaginase II [Escherichia coli APEC O1], gi\|115514308\|gb\|ABJ02383... gi\|26249378, gi\|... - gi\|26249378\|ref\|NP_755418.1\| L-asparaginase II [Escherichia coli CFT073], gi\|26109786\|gb\|AAN81991.1\|... gi\|226899430, gi... - gi\|237706390\|ref\|ZP_04536871.1\| L-asparaginase II [Escherichia sp. 3_2_53FAA], gi\|226899430\|gb\|EEH85...	0.0	[1..348]	[1..348]
gi\|188487633, gi... - gi\|75515263\|ref\|ZP_00737447.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[1..348]	[1..348]
gi\|238902079, gi... - gi\|238902079\|ref\|YP_002927875.1\| periplasmic L-asparaginase II [Escherichia coli BW2952], gi\|2388620... gi\|253772205, gi... - gi\|253772205\|ref\|YP_003035036.1\| L-asparaginase, type II [Escherichia coli BL21(DE3)], gi\|253323249\|... ASG2_ECOLI, ASPG... - L-asparaginase 2 precursor (EC 3.5.1.1) (L-asparaginase II) (L-asparagine amidohydrolase II) (L-ASNa... EG10046 - periplasmic L-asparaginase 2 / L-asparaginase 2, periplasmic, high affinity EG10046 - periplasmic L-asparaginase 2 / L-asparaginase 2, periplasmic, high affinity gi\|85675767, gi\|... - gi\|89109734\|ref\|AP_003514.1\| periplasmic L-asparaginase II [Escherichia coli str. K-12 substr. W3110... gi\|169890344, gi... - gi\|170082509\|ref\|YP_001731829.1\| periplasmic L-asparaginase II [Escherichia coli str. K-12 substr. D...	0.0	[1..348]	[1..348]
gi\|28900229, gi\|... - gi\|28900229\|ref\|NP_799884.1\| L-asparaginase II [Vibrio parahaemolyticus RIMD 2210633], gi\|28808540\|d... gi\|28808540 - gi\|28808540\|dbj\|BAC61717.1\| periplasmic L-asparaginase II [Vibrio parahaemolyticus RIMD 2210633]	0.0	[3..348]	[7..354]
gi\|75857807, gi\|... - gi\|75857807\|ref\|ZP_00765419.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	0.0	[3..348]	[7..354]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFFRKTALA ALVMGFSGAA FALPNITILA TGGTIAGGGD SATKSNYTAG KVGVENLVDA  60
   61 VPQLKDIAVV KGEQVVNIGS QDMNDEVWLT LAKKINTECD STDGFVITHG TDTMEETAYF 120
  121 LDLTVKCNKP VVLVGAMRPS TSMSADGPFN LYNAVVTAAD KQSANRGVLV VMNDTVMDGR 180
  181 DVTKTNTTDV ATFKAVNYGP LGYIHNGKID YQRTPERKHT TSTPFDVSKL TALPKVGIVY 240
  241 NYANASDLPA KALVDAGYDG IVSAGVGNGN LYKTVFDTLA TAAHNGTVVV RSSRVPTGAT 300
  301 TQDAEVDDAK YGFVASGTLN PQKARVLLQL ALTQTKDPKQ IQTMFNQY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	4ecaA
Description:	Asparaginase type II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
asparaginase activity	5.31552786314061	bayes_pls_golite062009
hydrolase activity	4.24082880889802	bayes_pls_golite062009
catalytic activity	1.35076351157997	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.739997194025722	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	0.584091474722373	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: