Protein: | gi|29136499, gi|... |
Organism: | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 |
Length: | 449 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29136499, gi|....
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..449] | [1..449] |
|
0.0 | [1..449] | [1..449] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
|
0.0 | [1..448] | [1..448] |
Region A: Residues: [1-132] |
1 11 21 31 41 51 | | | | | | 1 MLSSQTSSIF TVSRLNQTVR LLLEQEMGQV WISGEISNFT QPASGHWYFT LKDDTAQVRC 60 61 AMFRNSNRRV TFRPQHGQQV LVRANITLYE PRGDYQIIAE SMQPAGEGLL QQKYEQLKAK 120 121 LHAEGLFDQQ HK |
Detection Method: | ![]() |
Confidence: | 13.443697 |
Match: | PF01336.16 |
Description: | No description for PF01336.16 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.452 | 0.020 | DNA catabolic process | d.85.1 | RNA bacteriophage capsid protein |
View | Download | 0.518 | 0.018 | DNA catabolic process | d.110.2 | GAF domain-like |
View | Download | 0.507 | 0.018 | DNA catabolic process | b.8.1 | TRAF domain-like |
View | Download | 0.577 | N/A | N/A | b.83.1 | Fibre shaft of virus attachment proteins |
View | Download | 0.497 | N/A | N/A | d.238.1 | Hypothetical protein TM0875 |
Region A: Residues: [133-196] |
1 11 21 31 41 51 | | | | | | 1 QPLPSPAHCV GVITSKTGAA LHDILHVLKR RDPSLPVIIY PTAVQGDDAP GQIVRAIELA 60 61 NTRG |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.791 | d.68.3 | SirA-like |
View | Download | 0.651 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
View | Download | 0.641 | c.78.2 | Aspartate/glutamate racemase |
View | Download | 0.857 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
View | Download | 0.620 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
Region A: Residues: [197-449] |
1 11 21 31 41 51 | | | | | | 1 ECDVLIVGRG GGSLEDLWSF NDERVARAIF ASRIPVVSAV GHETDVTIAD FVADLRAPTP 60 61 SAAAEIVSRN QQELLRQIQS AQQRLGMAMD YYLANRSRRF TQIFHRLQQQ HPQLRLARQQ 120 121 TALERLRQRM GFALEARIKQ ATQRQQRVSQ RLSQQNPQPR IHRVQSRIQQ LEYRLTENIR 180 181 SRLSEQRERF GNAVTHLEAV SPLATLARGY TVSTTTDGKV LKKIKQVKAG DIMTTRLEDG 240 241 WLESEVKSVT PGT |
Detection Method: | ![]() |
Confidence: | 92.958607 |
Match: | PF02601.6 |
Description: | No description for PF02601.6 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.317 | 0.659 | DNA catabolic process | b.1.1 | Immunoglobulin |
View | Download | 0.324 | 0.031 | DNA catabolic process | a.35.1 | lambda repressor-like DNA-binding domains |
View | Download | 0.331 | 0.022 | DNA catabolic process | d.58.17 | Metal-binding domain |
View | Download | 0.486 | 0.018 | DNA catabolic process | g.41.3 | Zinc beta-ribbon |
View | Download | 0.279 | N/A | N/A | d.17.2 | Copper amine oxidase, domains 1 and 2 |