YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29136499, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29136499, gi|....

Description	E-value	Query Range	Subject Range
gi\|167991817, gi... - gi\|205329864\|gb\|EDZ16628.1\| exodeoxyribonuclease VII, large subunit [Salmonella enterica subsp. ente... EX7L_SALTY - Exodeoxyribonuclease 7 large subunit OS=Salmonella typhimurium GN=xseA PE=3 SV=1 EX7L_SALTY - Exodeoxyribonuclease 7 large subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... EX7L_SALTY - Exodeoxyribonuclease 7 large subunit OS=Salmonella typhimurium GN=xseA PE=3 SV=1 gi\|197240351, gi... - gi\|197262096\|ref\|ZP_03162170.1\| exodeoxyribonuclease VII, large subunit [Salmonella enterica subsp. ... lcl\|NC_016856.1_... - [gene=xseA] [protein=exodeoxyribonuclease VII large subunit] [protein_id=YP_005238605.1] [location=2...	0.0	[1..449]	[1..449]
EX7L_SALPA - Exodeoxyribonuclease 7 large subunit OS=Salmonella paratyphi A GN=xseA PE=3 SV=1 EX7L_SALPK - Exodeoxyribonuclease 7 large subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=xseA PE=3 SV=1 EX7L_SALPA - Exodeoxyribonuclease 7 large subunit OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=xseA P...	0.0	[1..449]	[1..449]
gi\|30042156, gi\|... - gi\|30063901\|ref\|NP_838072.1\| exodeoxyribonuclease VII large subunit [Shigella flexneri 2a str. 2457T... EX7L_SHIFL - Exodeoxyribonuclease 7 large subunit OS=Shigella flexneri GN=xseA PE=3 SV=4 gi\|56383673, gi\|... - gi\|56480122\|ref\|NP_708348.2\| exodeoxyribonuclease VII large subunit [Shigella flexneri 2a str. 301],...	0.0	[1..448]	[1..448]
gi\|124498698, gi... - gi\|124531252\|ref\|ZP_01701594.1\| exodeoxyribonuclease VII, large subunit [Escherichia coli B], gi\|124... EX7L_ECOHS - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli O9:H4 (strain HS) GN=xseA PE=3 SV=1 EX7L_ECOLC - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=x...	0.0	[1..448]	[1..448]
EX7L_SHIBS - Exodeoxyribonuclease 7 large subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=xseA PE=3 SV=1	0.0	[1..448]	[1..448]
EX7L_SHIF8 - Exodeoxyribonuclease 7 large subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=xseA PE=3 SV=...	0.0	[1..448]	[1..448]
EX7L_SHISS - Exodeoxyribonuclease 7 large subunit OS=Shigella sonnei (strain Ss046) GN=xseA PE=3 SV=1 gi\|192958322, gi... - gi\|75237745\|ref\|ZP_00721761.1\| COG1570: Exonuclease VII, large subunit [Escherichia coli E110019], g... gi\|75229159, gi\|... - gi\|75229159\|ref\|ZP_00715731.1\| COG1570: Exonuclease VII, large subunit [Escherichia coli B7A], gi\|19... EX7L_SHIB3 - Exodeoxyribonuclease 7 large subunit OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=... EX7L_ECO8A - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli O8 (strain IAI1) GN=xseA PE=3 SV=1 EX7L_ECO55 - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli (strain 55989 / EAEC) GN=xseA PE=3 SV=1	0.0	[1..448]	[1..448]
gi\|188491415, gi... - gi\|75515849\|ref\|ZP_00737984.1\| COG1570: Exonuclease VII, large subunit [Escherichia coli 53638], gi\|...	0.0	[1..448]	[1..448]
EX7L_ECOLI - Exodeoxyribonuclease 7 large subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII large subunit) (Exonucl... EX7L_ECODH - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli (strain K12 / DH10B) GN=xseA PE=3 SV=1 EG11072 - exonuclease VII, large subunit / Exonuclease VII, large subunit EX7L_ECOBW - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=xseA PE=3... EG11072 - exonuclease VII, large subunit / Exonuclease VII, large subunit gi\|89109315, gi\|... - gi\|89109315\|ref\|AP_003095.1\| exonuclease VII, large subunit [Escherichia coli str. K-12 substr. W311... gi\|251785834, gi... - gi\|251785834\|ref\|YP_003000138.1\| hypothetical protein B21_02363 [Escherichia coli BL21], gi\|24237810... gi\|194423505, gi... - gi\|83586841\|ref\|ZP_00925472.1\| COG1570: Exonuclease VII, large subunit [Escherichia coli 101-1], gi\|... gi\|253978551, gi... - gi\|254289244\|ref\|YP_003054992.1\| exodeoxyribonuclease VII large subunit [Escherichia coli BL21(DE3)]... gi\|253974384, gi... - gi\|254162483\|ref\|YP_003045591.1\| exodeoxyribonuclease VII large subunit [Escherichia coli B str. REL...	0.0	[1..448]	[1..448]
gi\|148275 - gi\|148275\|gb\|AAA24766.1\| exonuclease VII large subunit [Escherichia coli]	0.0	[1..448]	[1..448]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSQTSSIF TVSRLNQTVR LLLEQEMGQV WISGEISNFT QPASGHWYFT LKDDTAQVRC  60
   61 AMFRNSNRRV TFRPQHGQQV LVRANITLYE PRGDYQIIAE SMQPAGEGLL QQKYEQLKAK 120
  121 LHAEGLFDQQ HK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.443697
Match:	PF01336.16
Description:	No description for PF01336.16 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPLPSPAHCV GVITSKTGAA LHDILHVLKR RDPSLPVIIY PTAVQGDDAP GQIVRAIELA  60
   61 NTRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.857	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain

Predicted Domain #3

Region A:
Residues: [197-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECDVLIVGRG GGSLEDLWSF NDERVARAIF ASRIPVVSAV GHETDVTIAD FVADLRAPTP  60
   61 SAAAEIVSRN QQELLRQIQS AQQRLGMAMD YYLANRSRRF TQIFHRLQQQ HPQLRLARQQ 120
  121 TALERLRQRM GFALEARIKQ ATQRQQRVSQ RLSQQNPQPR IHRVQSRIQQ LEYRLTENIR 180
  181 SRLSEQRERF GNAVTHLEAV SPLATLARGY TVSTTTDGKV LKKIKQVKAG DIMTTRLEDG 240
  241 WLESEVKSVT PGT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.958607
Match:	PF02601.6
Description:	No description for PF02601.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits