YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16761079
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16761079.

Description	E-value	Query Range	Subject Range
gi\|24113463, gi\|... - ref\|NP_707973.1\| hypothetical protein SF2146 [Shigella flexneri 2a str. 301], gb\|AAN43680.1\| orf, c... gi\|110806051, gi... - gi\|110806051\|ref\|YP_689571.1\| hypothetical protein SFV_2142 [Shigella flexneri 5 str. 8401], gi\|1106...	0.0	[1..453]	[48..500]
gi\|62128354, gi\|... - gi\|62180721\|ref\|YP_217138.1\| putative protease [Salmonella enterica subsp. enterica serovar Cholerae... gi\|198242901, gi... - gi\|198242901\|ref\|YP_002216222.1\| peptidase, U32 family [Salmonella enterica subsp. enterica serovar ...	0.0	[1..453]	[1..453]
gi\|238723728, gi... - gi\|77974644\|ref\|ZP_00830183.1\| COG0826: Collagenase and related proteases [Yersinia frederiksenii AT...	0.0	[2..453]	[3..454]
gi\|37526670, gi\|... - gi\|37526670\|ref\|NP_930014.1\| hypothetical protein plu2780 [Photorhabdus luminescens subsp. laumondii...	0.0	[1..451]	[1..451]
gi\|189367830, gi... - gi\|189367830\|gb\|EDU86246.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4501], gi\|1687618... gi\|168757983, gi... - gi\|189355129\|gb\|EDU73548.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4401], gi\|1687579... gi\|168775467, gi... - gi\|187768961\|gb\|EDU32805.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4196], gi\|1687754... gi\|15832143, gi\|... - gi\|15832143\|ref\|NP_310916.1\| hypothetical protein ECs2889 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168769838, gi... - gi\|189361221\|gb\|EDU79640.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4486], gi\|1687698... gi\|168788754, gi... - gi\|189371572\|gb\|EDU89988.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC869], gi\|16878875... gi\|168782368, gi... - gi\|189000095\|gb\|EDU69081.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4076], gi\|1687823... gi\|170019592, gi... - gi\|170019592\|ref\|YP_001724546.1\| peptidase U32 [Escherichia coli ATCC 8739], gi\|169754520\|gb\|ACA7721... gi\|189378397, gi... - gi\|189378397\|gb\|EDU96813.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC508], gi\|16879903... gi\|25320717, gi\|... - pir\|\|D85835 hypothetical protein yegQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|188015399, gi... - gi\|188015399\|gb\|EDU53521.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4113], gi\|1687504... gi\|208727840, gi... - gi\|208808039\|ref\|ZP_03250376.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|195938275 - gi\|195938275\|ref\|ZP_03083657.1\| peptidase U32 [Escherichia coli O157:H7 str. EC4024] gi\|208819849, gi... - gi\|208819849\|ref\|ZP_03260169.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|208817127, gi... - gi\|208817127\|ref\|ZP_03258219.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|217317339, gi... - gi\|217329571\|ref\|ZP_03445650.1\| peptidase, U32 family [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|209396381, gi... - gi\|209396381\|ref\|YP_002271324.1\| peptidase, U32 family [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|124501722, gi... - gi\|124526666\|ref\|ZP_01698575.1\| peptidase U32 [Escherichia coli B], gi\|124501722\|gb\|EAY49184.1\| pept... gi\|251785461, gi... - gi\|251785461\|ref\|YP_002999765.1\| hypothetical protein B21_01978 [Escherichia coli BL21], gi\|24237773... gi\|253978167, gi... - gi\|254288860\|ref\|YP_003054608.1\| predicted peptidase [Escherichia coli BL21(DE3)], gi\|253978167\|gb\|A... gi\|253973973, gi... - gi\|254162072\|ref\|YP_003045180.1\| predicted peptidase [Escherichia coli B str. REL606], gi\|253973973\|... gi\|254793866, gi... - gi\|254793866\|ref\|YP_003078703.1\| predicted peptidase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|15832143, gi\|... - gi\|15832143\|ref\|NP_310916.1\| hypothetical protein ECs2889 [Escherichia coli O157:H7], gi\|13362358\|db... gi\|26108864, gi\|... - gi\|26248459\|ref\|NP_754499.1\| putative protease yegQ [Escherichia coli CFT073], gi\|26108864\|gb\|AAN810... gi\|12516290, gi\|... - gi\|15802562\|ref\|NP_288589.1\| hypothetical protein Z3250 [Escherichia coli O157:H7 EDL933], gi\|125162... gi\|194431441, gi... - gi\|83571189\|ref\|ZP_00922630.1\| COG0826: Collagenase and related proteases [Shigella dysenteriae 1012... gi\|194436156, gi... - gi\|83588073\|ref\|ZP_00926698.1\| COG0826: Collagenase and related proteases [Escherichia coli 101-1], ... gi\|74312606, gi\|... - gi\|74312606\|ref\|YP_311025.1\| hypothetical protein SSON_2134 [Shigella sonnei Ss046], gi\|73856083\|gb\|... gi\|75196136 - gi\|75196136\|ref\|ZP_00706206.1\| COG0826: Collagenase and related proteases [Escherichia coli HS] gi\|188490879, gi... - gi\|75514113\|ref\|ZP_00736443.1\| COG0826: Collagenase and related proteases [Escherichia coli 53638], ...	0.0	[1..453]	[1..453]
gi\|30063526, gi\|... - gi\|30063526\|ref\|NP_837697.1\| hypothetical protein S2271 [Shigella flexneri 2a str. 2457T], gi\|300417... gi\|56480033, gi\|... - gi\|56480033\|ref\|NP_707973.2\| hypothetical protein SF2146 [Shigella flexneri 2a str. 301], gi\|5638358...	0.0	[1..453]	[1..453]
gi\|237704542, gi... - gi\|237704542\|ref\|ZP_04535023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|215265376, gi... - gi\|215487304\|ref\|YP_002329735.1\| predicted peptidase [Escherichia coli O127:H6 str. E2348/69], gi\|21... gi\|218365734, gi... - gi\|218558965\|ref\|YP_002391878.1\| putative peptidase [Escherichia coli S88], gi\|218365734\|emb\|CAR0347... gi\|110642295, gi... - gi\|110642295\|ref\|YP_670025.1\| putative protease YegQ [Escherichia coli 536], gi\|110343887\|gb\|ABG7012... gi\|91211373, gi\|... - gi\|91211373\|ref\|YP_541359.1\| hypothetical protein UTI89_C2360 [Escherichia coli UTI89], gi\|91072947\|... gi\|190909730, gi... - gi\|75242906\|ref\|ZP_00726612.1\| COG0826: Collagenase and related proteases [Escherichia coli F11], gi... gi\|218427707, gi... - gi\|218690143\|ref\|YP_002398355.1\| putative peptidase [Escherichia coli ED1a], gi\|218427707\|emb\|CAR086... gi\|117624282, gi... - gi\|117624282\|ref\|YP_853195.1\| hypothetical protein APECO1_1176 [Escherichia coli APEC O1], gi\|115513...	0.0	[1..453]	[1..453]
gi\|197093358, gi... - gi\|197361882\|ref\|YP_002141518.1\| putative protease [Salmonella enterica subsp. enterica serovar Para... gi\|56127208, gi\|... - gi\|56412951\|ref\|YP_150026.1\| putative protease [Salmonella enterica subsp. enterica serovar Paratyph...	0.0	[1..453]	[1..453]
gi\|209912806, gi... - gi\|209919547\|ref\|YP_002293631.1\| putative protease [Escherichia coli SE11], gi\|209912806\|dbj\|BAG7788... gi\|218352437, gi... - gi\|218695705\|ref\|YP_002403372.1\| putative peptidase [Escherichia coli 55989], gi\|218352437\|emb\|CAU98... gi\|75259219, gi\|... - gi\|75259219\|ref\|ZP_00730567.1\| COG0826: Collagenase and related proteases [Escherichia coli E22], gi... gi\|193069265, gi... - gi\|75236277\|ref\|ZP_00720386.1\| COG0826: Collagenase and related proteases [Escherichia coli E110019]... gi\|75227125, gi\|... - gi\|75227125\|ref\|ZP_00713940.1\| COG0826: Collagenase and related proteases [Escherichia coli B7A], gi... gi\|194413040, gi... - gi\|75209908\|ref\|ZP_00710100.1\| COG0826: Collagenase and related proteases [Escherichia coli B171], g... gi\|157079758, gi... - gi\|75186879\|ref\|ZP_00700146.1\| COG0826: Collagenase and related proteases [Escherichia coli E24377A]... EG14060 - putative peptidase / Function unknown, U32 peptidase family gi\|169889546, gi... - gi\|170081711\|ref\|YP_001731031.1\| peptidase [Escherichia coli str. K-12 substr. DH10B], gi\|169889546\|... YEGQ_ECOLI - Putative protease yegQ (EC 3.4.-.-) - Escherichia coli EG14060 - putative peptidase / Function unknown, U32 peptidase family gi\|238901271, gi... - gi\|238901271\|ref\|YP_002927067.1\| putative peptidase [Escherichia coli BW2952], gi\|238862791\|gb\|ACR64... gi\|75177201, gi\|... - gi\|75177201\|ref\|ZP_00697299.1\| COG0826: Collagenase and related proteases [Shigella boydii BS512], g... gi\|89108901, gi\|... - gi\|89108901\|ref\|AP_002681.1\| predicted peptidase [Escherichia coli str. K-12 substr. W3110], gi\|1736...	0.0	[1..453]	[1..453]
gi\|81244867, gi\|... - gi\|82543456\|ref\|YP_407403.1\| hypothetical protein SBO_0908 [Shigella boydii Sb227], gi\|81244867\|gb\|A...	0.0	[1..453]	[1..453]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKPELLSPA GTLKNMRYAF AYGADAVYAG QPRYSLRVRN NEFNHENLQL GINEAHALGK  60
   61 KFYVVVNIAP HNAKLKTFIR DLKPVVEMGP DALIMSDPGL IMLVREHFPA MPIHLSVQAN 120
  121 AVNWATVKFW QQMGLTRVIL SRELSLEEIE EIRQQVPDME IEIFVHGALC MAYSGRCLLS 180
  181 GYINKRDPNQ GTCTNACRWE YNVQEGKEDV VGNIVHKHEP IPVQNVEPTL GIGAPTDKVF 240
  241 MIEEAQRPGE YMTAFEDEHG TYIMNSKDLR AIAHVERLTK MGVHSLKI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.64
Match:	1u83A
Description:	PSL synthase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [289-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGRTKSFYYC ARTAQVYRKA IDDAAAGKPF DPTLLETLEG LAHRGYTEGF LRRHTHDDYQ  60
   61 NYEYGYSVSE RQQFVGEFTG ERKGQLAAVA VKNKFSVGDS LELMTPQGNI NFTLEQMENA 120
  121 KGDAMPVAPG DGYTVWMPVP QDVTLDYALL MRNFSGESTR NPHAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.502	0.448	peptidase activity	b.1.1	Immunoglobulin
View	Download	0.543	0.282	hydrolase activity	b.1.18	E set domains
View	Download	0.429	0.009	hydrolase activity	b.1.2	Fibronectin type III
View	Download	0.451	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.444	N/A	N/A	d.56.1	GroEL-intermediate domain like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits