YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25301380, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25301380, gi|....

Description	E-value	Query Range	Subject Range
gi\|75830162, gi\|... - gi\|75830162\|ref\|ZP_00759445.1\| COG0824: Predicted thioesterase [Vibrio cholerae MO10], gi\|254848926\|... gi\|121727648, gi... - gi\|75814779\|ref\|ZP_00745330.1\| COG0824: Predicted thioesterase [Vibrio cholerae V52], gi\|121727648\|r... gi\|227081969, gi... - gi\|227081969\|ref\|YP_002810520.1\| hypothetical protein VCM66_1763 [Vibrio cholerae M66-2], gi\|2270098... gi\|229511698, gi... - gi\|229511698\|ref\|ZP_04401177.1\| 4-hydroxybenzoyl-CoA thioesterase family active site protein [Vibrio... gi\|11354652 - pir\|\|D82152 conserved hypothetical protein VC1840 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153828556, gi... - gi\|153828556\|ref\|ZP_01981223.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887595... gi\|153827557, gi... - gi\|153827557\|ref\|ZP_01980224.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149738470... gi\|121591343, gi... - gi\|121591343\|ref\|ZP_01678631.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215468... gi\|9656367, gi\|1... - gi\|9656367\|gb\|AAF94988.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|153820330, gi... - gi\|153820330\|ref\|ZP_01972997.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650...	8.0E-27	[2..127]	[25..150]
tr\|E4R7V3\|E4R7V3... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_1255 PE=4 SV=1 tr\|I7BIA3\|I7BIA3... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_5727 PE=4 SV=1 gi\|82740027, gi\|... - gi\|82740027\|ref\|ZP_00902797.1\| 4-hydroxybenzoyl-CoA thioesterase [Pseudomonas putida F1], gi\|8271289... gi\|24982666, gi\|... - gi\|26987953\|ref\|NP_743378.1\| hypothetical protein PP_1218 [Pseudomonas putida KT2440], gi\|24982666\|g... gi\|5514775 - gi\|5514775\|emb\|CAB50777.1\| hypothetical protein [Pseudomonas putida]	1.0E-26	[3..129]	[12..139]
gi\|28897830, gi\|... - gi\|28897830\|ref\|NP_797435.1\| hypothetical protein VP1056 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806043 - gi\|28806043\|dbj\|BAC59319.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	1.0E-26	[2..127]	[9..134]
gi\|37199211, gi\|... - gi\|37680463\|ref\|NP_935072.1\| hypothetical protein VV2279 [Vibrio vulnificus YJ016], gi\|37199211\|dbj\|...	3.0E-26	[2..127]	[9..134]
gi\|104783071, gi... - gi\|95112058\|emb\|CAK16785.1\| putative thioesterase [Pseudomonas entomophila L48], gi\|104783071\|ref\|YP... gi\|95112058 - gi\|95112058\|emb\|CAK16785.1\| putative thioesterase [Pseudomonas entomophila L48]	4.0E-26	[3..129]	[12..139]
gi\|74017043, gi\|... - gi\|74017043\|ref\|ZP_00687668.1\| 4-hydroxybenzoyl-CoA thioesterase [Burkholderia ambifaria AMMD], gi\|7...	6.0E-26	[2..129]	[18..145]
gi\|91685881, gi\|... - gi\|91781927\|ref\|YP_557133.1\| 4-hydroxybenzoyl-CoA thioesterase [Burkholderia xenovorans LB400], gi\|9...	8.0E-26	[2..129]	[18..145]
gi\|28871121, gi\|... - gi\|28871121\|ref\|NP_793740.1\| hypothetical protein PSPTO_3976 [Pseudomonas syringae pv. tomato str. D... gi\|213926185, gi... - gi\|213969187\|ref\|ZP_03397326.1\| conserved hypothetical protein TIGR00051 [Pseudomonas syringae pv. t... tr\|Q87Y36\|Q87Y36... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_3976 PE=4 SV=1	1.0E-25	[3..128]	[12..138]
gi\|110735337 - gi\|110735337\|gb\|ABG89239.1\| hypothetical protein mh1646 [Mannheimia haemolytica]	1.0E-25	[1..129]	[7..134]
gi\|53688692 - gi\|53688692\|ref\|ZP_00111306.2\| COG0824: Predicted thioesterase [Nostoc punctiforme PCC 73102]	2.0E-25	[2..131]	[30..161]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTQIKVRGY HLDVYQHVNN ARYLEFLEEA RWDGLENSDS FQWMTARNIA FVVVNININY  60
   61 RRPAVLSDLL TVTSQVQQLN GKSGVLSQTI TLEPEGQVVA DALITFVCID LKTQKALPLE 120
  121 GELREKLEQM VQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1njkA
Description:	Hypothetical protein YbaW
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: