YRC Public Data Repository - Protein Structure Prediction

Protein:	KPRS_ECOLI
Organism:	Escherichia coli
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KPRS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|85059858, gi\|... - gi\|85059858\|ref\|YP_455560.1\| ribose-phosphate pyrophosphokinase [Sodalis glossinidius str. 'morsitan...	380.0	[0..1]	[315..1]
gi\|77359997, gi\|... - gi\|77359997\|ref\|YP_339572.1\| ribose-phosphate pyrophosphokinase [Pseudoalteromonas haloplanktis TAC1...	379.0	[0..1]	[315..1]
gi\|227111326 - gi\|227111326\|ref\|ZP_03824982.1\| ribose-phosphate pyrophosphokinase [Pectobacterium carotovorum subsp... gi\|49611639, gi\|... - gi\|50121113\|ref\|YP_050280.1\| ribose-phosphate pyrophosphokinase [Pectobacterium atrosepticum SCRI104... gi\|253688504, gi... - gi\|253688504\|ref\|YP_003017694.1\| ribose-phosphate pyrophosphokinase [Pectobacterium carotovorum subs...	378.0	[0..1]	[315..1]
gi\|68546109, gi\|... - gi\|68546109\|ref\|ZP_00585658.1\| Ribose-phosphate pyrophosphokinase [Shewanella amazonensis SB2B], gi\|...	378.0	[0..1]	[315..1]
gi\|186895369, gi... - gi\|186895369\|ref\|YP_001872481.1\| ribose-phosphate pyrophosphokinase [Yersinia pseudotuberculosis PB1... gi\|167401471, gi... - gi\|167401471\|ref\|ZP_02306968.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Antiqua s... gi\|166961972, gi... - gi\|167420277\|ref\|ZP_02312030.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Orientali... gi\|167424659, gi... - gi\|167424659\|ref\|ZP_02316412.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Mediaeval... gi\|170024415, gi... - gi\|170024415\|ref\|YP_001720920.1\| ribose-phosphate pyrophosphokinase [Yersinia pseudotuberculosis YPI... gi\|165926486, gi... - gi\|165926486\|ref\|ZP_02222318.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Orientali... KPRS_YERPE - Ribose-phosphate pyrophosphokinase OS=Yersinia pestis GN=prs PE=3 SV=1 gi\|165913189, gi... - gi\|165938826\|ref\|ZP_02227380.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Orientali... Q66AX9\|Q66AX9_YERPS - Ribose-phosphate pyrophosphokinase - Yersinia pseudotuberculosis gi\|166009307, gi... - gi\|166009307\|ref\|ZP_02230205.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Antiqua s... gi\|166210908, gi... - gi\|166210908\|ref\|ZP_02236943.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis biovar Antiqua s... gi\|162420503, gi... - gi\|162420503\|ref\|YP_001606882.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis Angola], gi\|162... gi\|229894724, gi... - gi\|229894724\|ref\|ZP_04509904.1\| phosphoribosylpyrophosphate synthase [Yersinia pestis Pestoides A], ... gi\|229693761, gi... - gi\|229897424\|ref\|ZP_04512580.1\| phosphoribosylpyrophosphate synthase [Yersinia pestis biovar Orienta... gi\|229898067, gi... - gi\|229898067\|ref\|ZP_04513218.1\| phosphoribosylpyrophosphate synthase [Yersinia pestis biovar Orienta... gi\|238755543, gi... - gi\|238755543\|ref\|ZP_04616881.1\| Ribose-phosphate pyrophosphokinase [Yersinia ruckeri ATCC 29473], gi... gi\|153948595, gi... - gi\|153948595\|ref\|YP_001401043.1\| ribose-phosphate pyrophosphokinase [Yersinia pseudotuberculosis IP ... gi\|51589609, gi\|... - gi\|51596327\|ref\|YP_070518.1\| ribose-phosphate pyrophosphokinase [Yersinia pseudotuberculosis IP 3295... gi\|149366055, gi... - gi\|149366055\|ref\|ZP_01888090.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis CA88-4125], gi\|1... gi\|145210097, gi... - gi\|145598401\|ref\|YP_001162477.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis Pestoides F], g... gi\|108807392, gi... - gi\|108807392\|ref\|YP_651308.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis Antiqua], gi\|10877... gi\|16122256, gi\|... - gi\|218929124\|ref\|YP_002346999.1\| ribose-phosphate pyrophosphokinase [Yersinia pestis CO92], gi\|16122... gi\|108775305, gi... - gi\|229901936\|ref\|ZP_04517057.1\| phosphoribosylpyrophosphate synthase [Yersinia pestis Nepal516], gi\|...	377.0	[0..1]	[315..1]
KPRS_SALTI - Ribose-phosphate pyrophosphokinase OS=Salmonella typhi GN=prs PE=3 SV=2 KPRS_SALTY - Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium GN=prs PE=3 SV=2 KPRS_SALTI - Ribose-phosphate pyrophosphokinase OS=Salmonella typhi GN=prs PE=3 SV=2 KPRS_SALTY - Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G... lcl\|NC_016856.1_... - [gene=prsA] [protein=ribose-phosphate pyrophosphokinase] [protein_id=YP_005237712.1] [location=18884... gi\|29141568, gi\|... - gi\|29141568\|ref\|NP_804910.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica... gi\|16760673 - gi\|16760673\|ref\|NP_456290.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica... gi\|168820521, gi... - gi\|205342563\|gb\|EDZ29327.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica ... gi\|205339207, gi... - gi\|205339207\|gb\|EDZ25971.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica ... gi\|168237837, gi... - gi\|197289269\|gb\|EDY28636.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica ... gi\|161613721, gi... - gi\|161613721\|ref\|YP_001587686.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|283785504\|ref... - ribose-phosphate pyrophosphokinase [Citrobacter rodentium ICC168] KPRS_SALTY - Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium GN=prs PE=3 SV=2 gi\|205357928, gi... - gi\|205357928\|ref\|ZP_02574321.2\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|205357392, gi... - gi\|205357392\|ref\|ZP_02347364.2\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|204322978, gi... - gi\|204927636\|ref\|ZP_03218837.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|199602694, gi... - gi\|200390249\|ref\|ZP_03216860.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|206708516, gi... - gi\|207856713\|ref\|YP_002243364.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|205360281, gi... - gi\|205360281\|ref\|ZP_02681965.2\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|205358757, gi... - gi\|205358757\|ref\|ZP_02658872.2\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|194735902, gi... - gi\|194735902\|ref\|YP_002114812.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|194469964, gi... - gi\|194469964\|ref\|ZP_03075948.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|194450469, gi... - gi\|194450469\|ref\|YP_002045825.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|194401888, gi... - gi\|194443225\|ref\|YP_002041032.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|198244774, gi... - gi\|198244774\|ref\|YP_002215363.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|197243284, gi... - gi\|197265029\|ref\|ZP_03165103.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|197249386, gi... - gi\|197249386\|ref\|YP_002146247.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente... gi\|195873230, gi... - gi\|195873230\|ref\|ZP_02696672.2\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter...	377.0	[0..1]	[315..1]
gi\|86516950 - gi\|86516950\|gb\|ABC98167.1\| PrsA [Shigella boydii]	377.0	[0..1]	[315..1]
gi\|237731784, gi... - gi\|237731784\|ref\|ZP_04562265.1\| ribose-phosphate pyrophosphokinase [Citrobacter sp. 30_2], gi\|226907... gi\|214000989 - gi\|214000989\|ref\|ZP_03411724.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enter... gi\|62127977, gi\|... - gi\|62180344\|ref\|YP_216761.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica...	377.0	[0..1]	[315..23]
gi\|56127556, gi\|... - gi\|56413299\|ref\|YP_150374.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. enterica... gi\|197093701, gi... - gi\|197362224\|ref\|YP_002141861.1\| ribose-phosphate pyrophosphokinase [Salmonella enterica subsp. ente...	377.0	[0..1]	[315..1]
gi\|90326145, gi\|... - gi\|90412786\|ref\|ZP_01220786.1\| ribose-phosphate pyrophosphokinase [Photobacterium profundum 3TCK], g...	377.0	[0..1]	[315..1]

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Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDMKLFAGN ATPELAQRIA NRLYTSLGDA AVGRFSDGEV SVQINENVRG GDIFIIQSTC  60
   61 APTNDNLMEL VVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV 120
  121 GVDRVLTVDL HAEQIQGFFD VPVDNVFGSP ILLEDMLQLN LDNPIVVSPD IGGVVRARAI 180
  181 AKLLNDTDMA IIDKRRPRAN VSQVMHIIGD VAGRDCVLVD DMIDTGGTLC KAAEALKERG 240
  241 AKRVFAYATH PIFSGNAANN LRNSVIDEVV VCDTIPLSDE IKSLPNVRTL TLSGMLAEAI 300
  301 RRISNEESIS AMFEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.522879
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits