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View Structure Prediction Details

Protein: gi|24050786, gi|...
Organism: Shigella flexneri 2a str. 301
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24050786, gi|....

Description E-value Query
Range
Subject
Range
gi|86142279, gi|... - gi|86142279|ref|ZP_01060789.1| aldose 1-epimerase [Flavobacterium sp. MED217], gi|85831031|gb|EAQ494...
gi|86142279, gi|... - gi|86142279|ref|ZP_01060789.1| aldose 1-epimerase [Flavobacterium sp. MED217], gi|85831031|gb|EAQ494...
373.0 [0..1] [346..43]
gi|88805087, gi|... - gi|88805087|ref|ZP_01120607.1| aldose 1-epimerase [Robiginitalea biformata HTCC2501], gi|88785966|gb...
372.0 [0..1] [345..70]
gi|67858567, gi|... - gi|67934203|ref|ZP_00527285.1| Aldose 1-epimerase [Solibacter usitatus Ellin6076], gi|67858567|gb|EA...
371.0 [0..4] [343..63]
gi|91796017, gi|... - gi|92112927|ref|YP_572855.1| aldose 1-epimerase [Chromohalobacter salexigens DSM 3043], gi|91796017|...
370.0 [0..1] [346..36]
gi|90588418, gi|... - gi|90588418|ref|ZP_01244070.1| Aldose 1-epimerase [Flavobacterium johnsoniae UW101], gi|90436060|gb|...
370.0 [0..1] [346..42]
gi|161614994, gi... - gi|161614994|ref|YP_001588959.1| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Par...
gi|205324641, gi... - gi|205324641|gb|EDZ12480.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Saintp...
gi|238913333 - gi|238913333|ref|ZP_04657170.1| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Tenn...
gi|62126974, gi|... - gi|62179341|ref|YP_215758.1| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Cholera...
gi|205271813, gi... - gi|205352032|ref|YP_002225833.1| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Gal...
lcl|NC_016856.1_... - [gene=galM] [protein=aldose 1-epimerase] [protein_id=YP_005236492.1] [location=complement(837679..83...
gi|197262342, gi... - gi|197262342|ref|ZP_03162416.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Sa...
gi|199603460, gi... - gi|200391015|ref|ZP_03217626.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Vi...
gi|194446021, gi... - gi|194446021|ref|YP_002040009.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar N...
gi|194456599, gi... - gi|194470235|ref|ZP_03076219.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Ke...
gi|16764137, gi|... - gi|16764137|ref|NP_459752.1| aldose 1-epimerase [Salmonella typhimurium LT2], gi|16419278|gb|AAL1971...
gi|168263735, gi... - gi|205347833|gb|EDZ34464.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Hadar ...
gi|168466357, gi... - gi|195630990|gb|EDX49576.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Newpor...
gi|167994419, gi... - gi|205327694|gb|EDZ14458.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar 4,[5],...
gi|168230655, gi... - gi|205334814|gb|EDZ21578.1| galactose mutarotase [Salmonella enterica subsp. enterica serovar Kentuc...
363.0 [0..1] [343..1]
gi|77960612 - gi|77960612|ref|ZP_00824476.1| COG2017: Galactose mutarotase and related enzymes [Yersinia mollareti...
363.0 [0..3] [343..10]
gi|48861336, gi|... - gi|90020834|ref|YP_526661.1| aldose 1-epimerase [Saccharophagus degradans 2-40], gi|89950434|gb|ABD8...
363.0 [0..1] [344..7]
gi|153948622, gi... - gi|77632126|ref|ZP_00794712.1| COG2017: Galactose mutarotase and related enzymes [Yersinia pseudotub...
gi|170025168, gi... - gi|170025168|ref|YP_001721673.1| aldose 1-epimerase [Yersinia pseudotuberculosis YPIII], gi|16975170...
363.0 [0..9] [343..16]

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Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNETPALAP DGQPYRLLTL RNNAGMVVTL MDWGATLLSA RIPLSDGSVR EALLGCASPE  60
   61 CYQDQAAFLG ASIGRYANRI ANSRYTFDGE TVTLSPSQGV NQLHGGPEGF DKRRWQIVNQ 120
  121 NDRQVLFALS SDDGDQGFPG NLGATVQYRL TDDNRISITY RATVDKPCPV NMTNHVYFNL 180
  181 DGEQSDVRNH KLQILADEYL PVDEGGIPHD GLKSVAGTSF DFRSAKIIAS EFLADDDQRK 240
  241 VKGYDHAFLL QAKGDGKKVA AHVWSADEKL QLKVYTTAPA LQFYSGNFLG GTPSRGTEPY 300
  301 ADWQGLALES EFLPDSPNHP EWPQPDCFLR PGEEYSSLTE YQFIAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.69897
Match: 1snzA
Description: Crystal structure of apo human galactose mutarotase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aldose 1-epimerase activity 2.85100059704396 bayes_pls_golite062009
catalytic activity 0.770933849734279 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.68102716507433 bayes_pls_golite062009
racemase and epimerase activity 0.473636146090495 bayes_pls_golite062009
UDP-glucose 4-epimerase activity 0.46846097606394 bayes_pls_golite062009
binding 0.381228414514023 bayes_pls_golite062009
isomerase activity 0.106573908779409 bayes_pls_golite062009
protein binding 0.078592895113726 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle