YRC Public Data Repository - Protein Structure Prediction

Protein:	ARAA_ECOLI
Organism:	Escherichia coli
Length:	500 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15829320, gi\|... - gi\|15829320\|ref\|NP_308093.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. Sakai], gi\|1335952... gi\|208738382, gi... - gi\|208818259\|ref\|ZP_03258579.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4042], gi\|208... ARAA_ECO5E - L-arabinose isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=araA PE=3 SV=1 gi\|217321897, gi... - gi\|217325676\|ref\|ZP_03441760.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|168801487, gi... - gi\|189376351\|gb\|EDU94767.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC508], gi\|16880148... gi\|195939278 - gi\|195939278\|ref\|ZP_03084660.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4024] gi\|208726957, gi... - gi\|208807156\|ref\|ZP_03249493.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|208812173, gi... - gi\|208812173\|ref\|ZP_03253502.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|168771284, gi... - gi\|189359905\|gb\|EDU78324.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4486], gi\|1687712... gi\|187767769, gi... - gi\|187767769\|gb\|EDU31613.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4196], gi\|1687769... gi\|254791200, gi... - gi\|254791200\|ref\|YP_003076037.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|189000498, gi... - gi\|189000498\|gb\|EDU69484.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4076], gi\|1687819... gi\|189370828, gi... - gi\|189370828\|gb\|EDU89244.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC869], gi\|16878958... gi\|209746814, gi... - pir\|\|B85488 L-arabinose isomerase [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|168755668, gi... - gi\|189357027\|gb\|EDU75446.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4401], gi\|1687556... gi\|15799746, gi\|... - gi\|15799746\|ref\|NP_285758.1\| L-arabinose isomerase [Escherichia coli O157:H7 EDL933], gi\|12512759\|gb... gi\|168764061, gi... - gi\|189365872\|gb\|EDU84288.1\| L-arabinose isomerase [Escherichia coli O157:H7 str. EC4501], gi\|1687640... ARAA_ECO57 - L-arabinose isomerase OS=Escherichia coli O157:H7 GN=araA PE=3 SV=1	699.0	[0..1]	[500..1]
ARAA_SHIDS - L-arabinose isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=araA PE=3 SV=1	699.0	[0..1]	[500..1]
ARAA_YERP3 - L-arabinose isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=araA PE=3 SV... ARAA_YERPY - L-arabinose isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=araA PE=3 SV=1	699.0	[0..1]	[500..1]
ARAA_ECOLC - L-arabinose isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=araA PE=3 SV=1 sp\|B7UIA8\|ARAA_ECO27 - L-arabinose isomerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=araA PE=3 SV=1 ARAA_SHISS - L-arabinose isomerase OS=Shigella sonnei (strain Ss046) GN=araA PE=3 SV=1 ARAA_SHIBS - L-arabinose isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=araA PE=3 SV=1 gi\|191174215, gi... - gi\|75236941\|ref\|ZP_00721000.1\| COG2160: L-arabinose isomerase [Escherichia coli F11], gi\|191174215\|r... gi\|188489879, gi... - gi\|75511714\|ref\|ZP_00734352.1\| COG2160: L-arabinose isomerase [Escherichia coli 53638], gi\|188494680... ARAA_ECO27 - L-arabinose isomerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=araA PE=3 SV=1 gi\|194439397, gi... - gi\|83585214\|ref\|ZP_00923864.1\| COG2160: L-arabinose isomerase [Escherichia coli 101-1], gi\|194439397... ARAA_ECOSE - L-arabinose isomerase OS=Escherichia coli (strain SE11) GN=araA PE=3 SV=1 ARAA_ECO45 - L-arabinose isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=araA PE=3 SV=1 ARAA_ECO8A - L-arabinose isomerase OS=Escherichia coli O8 (strain IAI1) GN=araA PE=3 SV=1 gi\|191167768, gi... - gi\|75229087\|ref\|ZP_00715667.1\| COG2160: L-arabinose isomerase [Escherichia coli B7A], gi\|191167768\|r... gi\|75234301, gi\|... - gi\|75234301\|ref\|ZP_00718679.1\| COG2160: L-arabinose isomerase [Escherichia coli E110019], gi\|1930708... ARAA_ECO81 - L-arabinose isomerase OS=Escherichia coli O81 (strain ED1a) GN=araA PE=3 SV=1 ARAA_ECO24 - L-arabinose isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=araA PE=3 SV=1 gi\|226902119, gi... - gi\|237704207\|ref\|ZP_04534688.1\| L-arabinose isomerase [Escherichia sp. 3_2_53FAA], gi\|226902119\|gb\|E... ARAA_ECOHS - L-arabinose isomerase OS=Escherichia coli O9:H4 (strain HS) GN=araA PE=3 SV=1 ARAA_ECOBW - L-arabinose isomerase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=araA PE=3 SV=1 gi\|251783626, gi... - gi\|251783626\|ref\|YP_002997930.1\| hypothetical protein B21_00063 [Escherichia coli BL21], gi\|24237589... gi\|253325952, gi... - gi\|254286988\|ref\|YP_003052736.1\| L-arabinose isomerase [Escherichia coli BL21(DE3)], gi\|253976295\|gb... gi\|254037478, gi... - gi\|254037478\|ref\|ZP_04871555.1\| L-arabinose isomerase [Escherichia sp. 1_1_43], gi\|226840584\|gb\|EEH7... ARAA_ECOSM - L-arabinose isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=araA PE=3 SV=1 ARAA_ECOUT - L-arabinose isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=araA PE=3 SV=1 ARAA_ECOL5 - L-arabinose isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=araA PE=3 SV=1 ARAA_ECOLI - (P08202) L-arabinose isomerase (EC 5.3.1.4) ARAA_ECOK1 - L-arabinose isomerase OS=Escherichia coli O1:K1 / APEC GN=araA PE=3 SV=1 gi\|124530631, gi... - gi\|124530631\|ref\|ZP_01701215.1\| L-arabinose isomerase [Escherichia coli B], gi\|124499055\|gb\|EAY46551...	698.0	[0..1]	[500..1]
gi\|114794608, gi... - gi\|75766260\|pdb\|2AJT\|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli, gi\|75766259\|...	698.0	[0..1]	[500..1]
gi\|77963265 - gi\|77963265\|ref\|ZP_00827076.1\| COG2160: L-arabinose isomerase [Yersinia mollaretii ATCC 43969]	697.0	[0..1]	[500..1]
ARAA_ECOL6 - L-arabinose isomerase OS=Escherichia coli O6 GN=araA PE=3 SV=1 ARAA_ECOL6 - L-arabinose isomerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=araA PE=3 SV... gi\|227837867, gi... - gi\|227885038\|ref\|ZP_04002843.1\| L-arabinose isomerase [Escherichia coli 83972], gi\|227837867\|gb\|EEJ4...	697.0	[0..1]	[500..1]
gi\|194412595, gi... - gi\|75209416\|ref\|ZP_00709648.1\| COG2160: L-arabinose isomerase [Escherichia coli B171], gi\|194429375\|...	697.0	[0..1]	[500..1]
gi\|77976836, gi\|... - gi\|77976836\|ref\|ZP_00832305.1\| COG2160: L-arabinose isomerase [Yersinia intermedia ATCC 29909], gi\|2...	696.0	[0..1]	[500..5]
ARAA_SHIB3 - L-arabinose isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=araA PE=3 SV=1	696.0	[0..1]	[500..1]

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Predicted Domain #1

Region A:
Residues: [1-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFDNYEVW FVIGSQHLYG PETLRQVTQH AEHVVNALNT EAKLPCKLVL KPLGTTPDEI  60
   61 TAICRDANYD DRCAGLVVWL HTFSPAKMWI NGLTMLNKPL LQFHTQFNAA LPWDSIDMDF 120
  121 MNLNQTAHGG REFGFIGARM RQQHAVVTGH WQDKQAHERI GSWMRQAVSK QDTRHLKVCR 180
  181 FGDNMREVAV TDGDKVAAQI KFGFSVNTWA VGDLVQVVNS ISDGDVNALV DEYESCYTMT 240
  241 PATQIHGKKR QNVLEAARIE LGMKRFLEQG GFHAFTTTFE DLHGLKQLPG LAVQRLMQQG 300
  301 YGFAGEGDWK TAALLRIMKV MSTGLQGGTS FMEDYTYHFE KGNDLVLGSH MLEVCPSIAA 360
  361 EEKPILDVQH LGIGGKDDPA RLIFNTQTGP AIVASLIDLG DRYRLLVNCI DTVKTPHSLP 420
  421 KLPVANALWK AQPDLPTASE AWILAGGAHH TVFSHALNLN DMRQFAEMHD IEITVIDNDT 480
  481 RLPAFKDALR WNEVYYGFRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2ajtA
Description:	Crystal structure of L-Arabinose Isomerase from E.coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-arabinose isomerase activity	4.67352890355288	bayes_pls_golite062009
L-fucose isomerase activity	2.4976658784814	bayes_pls_golite062009
arabinose isomerase activity	2.4976658784814	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	2.04102216606895	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.57807563536301	bayes_pls_golite062009
catalytic activity	1.13806785143726	bayes_pls_golite062009
isomerase activity	0.49920155972955	bayes_pls_golite062009
binding	0.0608113085945745	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: