YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15896134, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15896134, gi|....

Description	E-value	Query Range	Subject Range
gi\|110683235, gi... - gi\|110802734\|ref\|YP_699473.1\| ribose-5-phosphate isomerase B [Clostridium perfringens SM101], gi\|110... gi\|18145863, gi\|... - gi\|18311180\|ref\|NP_563114.1\| ribose-5-phosphate isomerase B [Clostridium perfringens str. 13], gi\|18... gi\|110800386, gi... - gi\|110800386\|ref\|YP_696877.1\| ribose-5-phosphate isomerase B [Clostridium perfringens ATCC 13124], g... gi\|170711788, gi... - gi\|170711788\|gb\|EDT23970.1\| ribose 5-phosphate isomerase B [Clostridium perfringens B str. ATCC 3626... gi\|168213698, gi... - gi\|170714766\|gb\|EDT26948.1\| ribose 5-phosphate isomerase B [Clostridium perfringens CPE str. F4969],... gi\|168215827, gi... - gi\|182382193\|gb\|EDT79672.1\| ribose 5-phosphate isomerase B [Clostridium perfringens NCTC 8239], gi\|1...	239.0	[0..1]	[148..1]
gi\|20806675 - gi\|20806675\|ref\|NP_621846.1\| Ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis MB4... gi\|20806675, gi\|... - gi\|20806675\|ref\|NP_621846.1\| ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis MB4...	231.0	[0..3]	[147..156]
gi\|83591208, gi\|... - gi\|83591208\|ref\|YP_431217.1\| ribose-5-phosphate isomerase [Moorella thermoacetica ATCC 39073], gi\|83...	229.0	[0..1]	[149..19]
gi\|67873844, gi\|... - gi\|67873844\|ref\|ZP_00503831.1\| Ribose/galactose isomerase [Clostridium thermocellum ATCC 27405], gi\|... gi\|196251796, gi... - gi\|196251796\|ref\|ZP_03150462.1\| sugar-phosphate isomerase, RpiB/LacA/LacB family [Clostridium thermo...	229.0	[0..1]	[148..1]
gi\|78043323, gi\|... - gi\|78043323\|ref\|YP_361351.1\| ribose-5-phosphate isomerase B [Carboxydothermus hydrogenoformans Z-290...	229.0	[0..1]	[147..1]
gi\|89210215, gi\|... - gi\|89210215\|ref\|ZP_01188607.1\| Ribose/galactose isomerase:Ribose 5-phosphate isomerase B [Halothermo...	227.0	[0..1]	[145..175]
gi\|106895273, gi... - gi\|158321593\|ref\|YP_001514100.1\| RpiB/LacA/LacB family sugar-phosphate isomerase [Alkaliphilus oreml...	226.0	[0..1]	[148..1]
gi\|28202503, gi\|... - gi\|28210068\|ref\|NP_781012.1\| ribose-5-phosphate isomerase B [Clostridium tetani E88], gi\|28202503\|gb...	222.0	[0..1]	[148..1]
gi\|56381748, gi\|... - gi\|56421906\|ref\|YP_149224.1\| ribose-5-phosphate isomerase B [Geobacillus kaustophilus HTA426], gi\|56...	221.0	[0..1]	[147..1]
gi\|51893475, gi\|... - gi\|51893475\|ref\|YP_076166.1\| ribose-5-phosphate isomerase B [Symbiobacterium thermophilum IAM 14863]...	220.0	[0..1]	[150..1]

Back

Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIGSDHA GFSLKKEVIK HLESKNIEVK DFGTLTDESC DYPDYALKVA EEVAQKNFEF  60
   61 GILICGTGIG ISISANKVPG IRAAVCTDTF CAHASREHNN ANILAMGERV VGPGLAIDIV 120
  121 DTFLNSKFQG DRHQRRIDKI TQIEKKYNGG MK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1o1xA
Description:	Putative sugar-phosphate isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribose-5-phosphate isomerase activity	5.69997185547565	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	4.04314332668154	bayes_pls_golite062009
intramolecular oxidoreductase activity	3.57097659815257	bayes_pls_golite062009
isomerase activity	2.42530141345385	bayes_pls_golite062009
catalytic activity	2.21687627610124	bayes_pls_golite062009
allose 6-phosphate isomerase activity	2.20293230847792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: