YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15895575, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15895575, gi|....

Description	E-value	Query Range	Subject Range
gi\|220931544, gi... - gi\|89210648\|ref\|ZP_01189035.1\| Anti-sigma factor antagonist [Halothermothrix orenii H 168], gi\|89159...	110.0	[0..1]	[111..1]
gi\|196199365, gi... - gi\|196251402\|ref\|ZP_03150072.1\| anti-sigma-factor antagonist [Clostridium thermocellum DSM 4150], gi... gi\|125972642, gi... - gi\|67874109\|ref\|ZP_00504014.1\| Anti-sigma factor antagonist [Clostridium thermocellum ATCC 27405], g...	103.0	[0..1]	[111..1]
SP2AA_BACME - Anti-sigma F factor antagonist OS=Bacillus megaterium GN=spoIIAA PE=3 SV=1	101.0	[0..1]	[111..3]
gi\|28211849, gi\|... - gi\|28211849\|ref\|NP_782793.1\| anti-sigma F factor antagonist [Clostridium tetani E88], gi\|28204291\|gb...	101.0	[0..1]	[111..6]
gi\|168215677, gi... - gi\|182382199\|gb\|EDT79678.1\| anti-sigma F factor antagonist [Clostridium perfringens NCTC 8239], gi\|1... gi\|170715524, gi... - gi\|170715524\|gb\|EDT27706.1\| anti-sigma F factor antagonist [Clostridium perfringens CPE str. F4969],... gi\|110682310, gi... - gi\|110801809\|ref\|YP_699331.1\| anti-sigma F factor antagonist [Clostridium perfringens SM101], gi\|110... gi\|168208752, gi... - gi\|170713098\|gb\|EDT25280.1\| anti-sigma F factor antagonist [Clostridium perfringens B str. ATCC 3626... gi\|110676040, gi... - gi\|110801393\|ref\|YP_696730.1\| anti-sigma F factor antagonist [Clostridium perfringens ATCC 13124], g... gi\|170662623, gi... - gi\|170662623\|gb\|EDT15306.1\| anti-sigma F factor antagonist [Clostridium perfringens E str. JGS1987],... gi\|182624032, gi... - gi\|182624032\|ref\|ZP_02951820.1\| anti-sigma F factor antagonist [Clostridium perfringens D str. JGS17... gi\|169298091, gi... - gi\|169343531\|ref\|ZP_02864530.1\| anti-sigma F factor antagonist [Clostridium perfringens C str. JGS14... gi\|18145714, gi\|... - gi\|18311032\|ref\|NP_562966.1\| anti-sigma F factor antagonist [Clostridium perfringens str. 13], gi\|18...	101.0	[0..1]	[109..1]
gi\|150015698, gi... - gi\|82745394\|ref\|ZP_00907906.1\| Anti-sigma factor antagonist [Clostridium beijerincki NCIMB 8052], gi...	100.0	[0..1]	[108..1]
gi\|50513738, gi\|... - gi\|50513742\|pdb\|1THN\|D Chain D, Crystal Structures Of The Adp And Atp Bound Forms Of The Bacillus An... gi\|229497585, gi... - gi\|229497585\|ref\|ZP_04391285.1\| anti-sigma-factor antagonist [Geobacillus sp. Y412MC52], gi\|22933146... gi\|56420845, gi\|... - gi\|56420845\|ref\|YP_148163.1\| anti-sigma F factor antagonist (stage II sporulation protein AA) [Geoba... gi\|220708932, gi... - gi\|221087282\|ref\|ZP_03556821.1\| anti-sigma-factor antagonist [Geobacillus sp. Y412MC61], gi\|22070893...	100.0	[0..1]	[111..3]
gi\|50513749, gi\|... - gi\|50513753\|pdb\|1TIL\|F Chain F, Crystal Structures Of The Adp And Atp Bound Forms Of The Bacillus An...	99.0	[0..1]	[111..6]
gi\|154686589, gi... - gi\|63146680\|emb\|CAG28931.1\| anti-sigma F factor antagonist [Bacillus amyloliquefaciens FZB42], gi\|15...	99.0	[0..1]	[111..3]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLDFKDING KLVVSIIGEL DHHSSEEIRN KIDDHIKFKG YKNVILDFSN VTFMDSSGIG  60
   61 VVIGRYKKLN SSGGSICVVG PKESVRRIFE LSGMLKIINI YGSLDKAVTS I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1th8B
Description:	Crystal Structures of the ADP and ATP bound forms of the Bacillus Anti-sigma factor SpoIIAB in complex with the Anti-anti-sigma SpoIIAA: inhibitory complex with ADP, crystal form II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.51984028488182	bayes_pls_golite062009
protein binding	0.99113615143823	bayes_pls_golite062009
transcription regulator activity	0.893093767470901	bayes_pls_golite062009
antisigma factor binding	0.52065892308738	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: