YRC Public Data Repository - Protein Structure Prediction

Protein:	MSRB2_RHIME
Organism:	Sinorhizobium meliloti 1021
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSRB2_RHIME.

Description	E-value	Query Range	Subject Range
gi\|150032205, gi... - gi\|150377658\|ref\|YP_001314253.1\| methionine sulfoxide reductase B [Sinorhizobium medicae WSM419], gi...	249.0	[0..1]	[147..1]
gi\|36959065, gi\|... - gi\|36959065\|gb\|AAQ87490.1\| Transcriptional regulator [Rhizobium sp. NGR234], gi\|227818810\|ref\|YP_002...	248.0	[0..1]	[147..1]
gi\|83836227, gi\|... - gi\|83952554\|ref\|ZP_00961285.1\| methionine sulfoxide reductase B [Roseovarius nubinhibens ISM], gi\|83...	246.0	[0..1]	[147..1]
gi\|60494275, gi\|... - gi\|60682841\|ref\|YP_212985.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacteroides fr...	234.0	[0..3]	[143..217]
gi\|89045709, gi\|... - gi\|89068746\|ref\|ZP_01156132.1\| methionine-R-sulfoxide reductase [Oceanicola granulosus HTCC2516], gi...	232.0	[0..1]	[147..1]
gi\|106890566, gi... - gi\|148656546\|ref\|YP_001276751.1\| methionine-R-sulfoxide reductase [Roseiflexus sp. RS-1], gi\|1485686...	232.0	[0..2]	[147..5]
gi\|53714858, gi\|... - gi\|53714858\|ref\|YP_100850.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacteroides fr...	231.0	[0..3]	[143..217]
gi\|163675335, gi... - gi\|163844612\|ref\|YP_001622267.1\| methionine sulfoxide reductase B [Brucella suis ATCC 23445], gi\|163... MSRB_BRUSU - Peptide methionine sulfoxide reductase MsrB OS=Brucella suis biovar 1 (strain 1330) GN=msrB PE=3 SV=... gi\|225686252, gi... - gi\|225686252\|ref\|YP_002734224.1\| methionine-R-sulfoxide reductase [Brucella melitensis ATCC 23457], ... gi\|225628886, gi... - gi\|225628886\|ref\|ZP_03786920.1\| methionine-R-sulfoxide reductase [Brucella ceti str. Cudo], gi\|22561... gi\|161337325, gi... - gi\|161620514\|ref\|YP_001594400.1\| methionine sulfoxide reductase B [Brucella canis ATCC 23365], gi\|16... gi\|254702838 - gi\|254702838\|ref\|ZP_05164666.1\| methionine sulfoxide reductase B [Brucella suis bv. 3 str. 686] MSRB_BRUME - Peptide methionine sulfoxide reductase msrB OS=Brucella melitensis GN=msrB PE=3 SV=1 gi\|254699702 - gi\|254699702\|ref\|ZP_05161530.1\| methionine sulfoxide reductase B [Brucella suis bv. 5 str. 513] MSRB_BRUSU - Peptide methionine sulfoxide reductase msrB OS=Brucella suis GN=msrB PE=3 SV=1 MSRB_BRUME - Peptide methionine sulfoxide reductase MsrB OS=Brucella melitensis biotype 1 (strain 16M / ATCC 2345... gi\|254711659 - gi\|254711659\|ref\|ZP_05173470.1\| methionine sulfoxide reductase B [Brucella pinnipedialis B2/94] gi\|254706043 - gi\|254706043\|ref\|ZP_05167871.1\| methionine sulfoxide reductase B [Brucella pinnipedialis M163/99/10] gi\|254715344 - gi\|254715344\|ref\|ZP_05177155.1\| methionine sulfoxide reductase B [Brucella ceti M13/05/1] gi\|254712273 - gi\|254712273\|ref\|ZP_05174084.1\| methionine sulfoxide reductase B [Brucella ceti M644/93/1] gi\|148369294, gi... - gi\|148558009\|ref\|YP_001257428.1\| methionine sulfoxide reductase B [Brucella ovis ATCC 25840], gi\|148... gi\|254720531 - gi\|254720531\|ref\|ZP_05182342.1\| methionine sulfoxide reductase B [Brucella sp. 83/13]	230.0	[0..1]	[145..1]
gi\|154246898, gi... - gi\|89362090\|ref\|ZP_01199901.1\| Methionine sulfoxide reductase B [Xanthobacter autotrophicus Py2], gi...	230.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYRKTDEEV SKLTPEQYRV TQQNGTERPF TGEYTDNKRP GIYVDIVSGE PLFASADKFD  60
   61 SGCGWPSFTK PIVPANVNEL RDNSHGMIRT EVRSAHGDSH LGHVFPDGPQ DRGGLRYCIN 120
  121 SAALRFIPRE EMEAEGYGGY FNQVEDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: