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View Structure Prediction Details

Protein: gi|2634890, gi|1...
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2634890, gi|1....

Description E-value Query
Range
Subject
Range
gi|254932336, gi... - gi|254932336|ref|ZP_05265695.1| glycine dehydrogenase subunit 1 [Listeria monocytogenes HPB2262], gi...
gi|254852602 - gi|254852602|ref|ZP_05241950.1| glycine dehydrogenase subunit 1 [Listeria monocytogenes FSL R2-503]
gi|254879578 - gi|254879578|ref|ZP_05252288.1| glycine dehydrogenase subunit 1 [Listeria monocytogenes FSL J2-071]
GCSPA_LISMF - Probable glycine dehydrogenase (decarboxylating) subunit 1 OS=Listeria monocytogenes serotype 4b (st...
gi|47018003, gi|... - gi|47093627|ref|ZP_00231384.1| glycine cleavage system P protein, subunit 1 [Listeria monocytogenes ...
gi|153166741, gi... - gi|254873058|ref|ZP_05245768.1| glycine dehydrogenase subunit 1 [Listeria monocytogenes FSL N1-017],...
382.0 [0..2] [447..3]

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Predicted Domain #1
Region A:
Residues: [1-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHRYLPATE KDKQEMLATI GVSSIDDLFA DIPENVKYKK EHQIKKAKSE TELTRELTKL  60
   61 ASKNRDTVQY ASFLGAGVYD HYQPVIVDHV ISRSEFYTAY TPYQPEISQG ELQAIFEFQT 120
  121 MICELTGMDI ANSSMYDGGT ALAEAAMLAS GHTKKKKIVV SKTVHPESRE VLKTYAKGQY 180
  181 IDVVEVPAAD GVTDLDALRQ TVCENTAAVI VQYPNFFGRI EPLKDIEPIA HQGKSMFIVS 240
  241 ANPLALGLLT PPGKFQSDIV VGDAHRFGIP SAYGGPHCGF FAVTKKLMRK VPGRLVGQTE 300
  301 DENGKRGFVL TLQAREQHIR RDKATSNICS NQALNALAAS VAMTALGKNG VKDIARQNLL 360
  361 KANYAKQEAK KAGLTVMFDG PMFNEFVIKL DEPVRAVNKR LLAKGMIGGY DLGLTYPELD 420
  421 CHMLIAVTEL RTKEEIDALI QELGDRHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.39794
Match: 1wytA
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.66922865456094 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 2.10290066978837 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 2.10290066978837 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.85532625717753 bayes_pls_golite062009
transaminase activity 1.83482013760414 bayes_pls_golite062009
transferase activity 0.93810038069762 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 0.71980637947887 bayes_pls_golite062009
methyltransferase activity 0.58373273750311 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.51745245786841 bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity 0.38671377495281 bayes_pls_golite062009
lyase activity 0.0414385380659299 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle