YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|113623614, gi...
Organism:	Oryza sativa Japonica Group
Length:	589 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113623614, gi....

Description	E-value	Query Range	Subject Range
gi\|75704350, gi\|... - gi\|75910625\|ref\|YP_324921.1\| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC 294...	322.0	[0..132]	[589..7]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	321.0	[0..129]	[586..7]
gi\|148262276, gi... - gi\|88937137\|ref\|ZP_01142720.1\| Fmu, rRNA SAM-dependent methyltransferase [Geobacter uraniumreducens ...	317.0	[0..128]	[585..6]
gi\|25303757 - pir\|\|AB1909 sun protein [imported] - Nostoc sp. (strain PCC 7120) gi\|17228315, gi\|... - gi\|17228315\|ref\|NP_484863.1\| sun protein [Nostoc sp. PCC 7120], gi\|17130165\|dbj\|BAB72777.1\| sun prot...	317.0	[0..132]	[589..7]
gi\|71278391, gi\|... - gi\|71278391\|ref\|YP_266800.1\| sun protein [Colwellia psychrerythraea 34H], gi\|71144131\|gb\|AAZ24604.1\|...	315.0	[0..128]	[586..5]
gi\|67924848, gi\|... - gi\|67924848\|ref\|ZP_00518244.1\| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8...	314.0	[0..129]	[584..11]
gi\|67874767, gi\|... - gi\|67874767\|ref\|ZP_00504380.1\| Fmu, rRNA SAM-dependent methyltransferase [Clostridium thermocellum A...	314.0	[0..128]	[587..4]
gi\|59481253, gi\|... - gi\|59713152\|ref\|YP_205928.1\| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [V...	311.0	[0..128]	[585..3]
gi\|98662148 - gi\|98662148\|dbj\|GAA00924.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	309.0	[0..129]	[586..4]
gi\|25303745 - pir\|\|C83963 hypothetical protein BH2507 [imported] - Bacillus halodurans (strain C-125) gi\|15615070, gi\|... - gi\|15615070\|ref\|NP_243373.1\| hypothetical protein BH2507 [Bacillus halodurans C-125], gi\|10175127\|db...	309.0	[0..128]	[584..6]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSASASAS PTAAAAADAD RYTYSPRLRW QPEVEEYFAA AYGRDRFARI SEALAHPSCY  60
   61 SCIRVNTLKS STDAVMHKLM NLVDQNGLCG GINGLEIGQQ NGGEQAHEGN SVVHKCPYSG 120
  121 LDNVLFVQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-589]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGPHALHYN SQPDQSIKEV IVSRKCAESV LRGAQVYIPG VLACSSHVEK GDKVAVSVAI  60
   61 EQPAEDGGWT VGITRGTVLQ GLQSDAHHEE RKGLYIGQGI TAMSRSGIFR VPHGVAVEMT 120
  121 ERVYKLPSFN DVLEGEIFLQ NLPSVVAARV LDPQPGERIL DMCAAPGGKT TAIAILMKDQ 180
  181 GEIIALDRSH NKVMDILKLA AEMDLNCIKA YKLDALKSVR KTNEAKYIGE AGSRTDAIVT 240
  241 LAEDSEPCIN KVDAGTTNAS EDSSTTSVVQ TDNKKTDDKR YVSKADLRKN LRRMRNGPGR 300
  301 NNCSGGRVEN SKGFLPNSFD RVLLDAPCSA LGLRPRLFAG EETLESLRNH ATYQRRMFDQ 360
  361 AVKLVHPGGV IVYSTCTINP GENEALVRYA LDKYKFLSLG SQHPKVGGPG IVGSFERSTK 420
  421 KYTEEWLTKH ESQLVQRFDP SSTLDTIGFF IAKFDVGQKD D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.522879
Match:	1sqfA
Description:	The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits