| Protein: | ORR21_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 691 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORR21_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
498.0 | [0..1] | [691..1] |
|
Region A: Residues: [1-412] |
1 11 21 31 41 51
| | | | | |
1 MAPVEDGGGV EFPVGMKVLV VDDDPTCLAV LKRMLLECRY DATTCSQATR ALTMLRENRR 60
61 GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR 120
121 MEELKNIWQH VIRKKFNENK EHEHSGSLDD TDRTRPTNND NEYASSANDG AEGSWKSQKK 180
181 KRDKDDDDGE LESGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG 240
241 LTRENVASHL QKFRLYLKRI AQHHAGIANP FCPPASSGKV GSLGGLDFQA LAASGQIPPQ 300
301 ALAALQDELL GRPTNSLVLP GRDQSSLRLA AVKGNKPHGE REIAFGQPIY KCQNNAYGAF 360
361 PQSSPAVGGM PSFSAWPNNK LGMADSTGTL GGMSNSQNSN IVLHELQQQP DA
|
| Detection Method: |  |
| Confidence: | 65.045757 |
| Match: | 1ny5A |
| Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
| two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
| two-component response regulator activity | 1.45919623810582 | bayes_pls_golite062009 |
| binding | 1.30574971150356 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0324692870996578 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0319901144782286 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.0199205367873159 | bayes_pls_golite062009 |
| nucleotide binding | 0.00540039127746217 | bayes_pls_golite062009 |
|
Region A: Residues: [413-480] |
1 11 21 31 41 51
| | | | | |
1 MLSGTLHSLD VKPSGIVMPS QSLNTFSASE GLSPNQNTLM IPAQSSGFLA AMPPSMKHEP 60
61 VLATSQPS
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 1ojlA |
| Description: | Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [481-691] |
1 11 21 31 41 51
| | | | | |
1 SSLLGGIDLV NQASTSQPLI SAHGGGNLSG LVNRNPNVVP SQGISTFHTP NNPYLVSPNS 60
61 MGMGSKQPPG VLKTENSDAL NHSYGYLGGS NPPMDSGLLS SQSKNTQFGL LGQDDITGSW 120
121 SPLPNVDSYG NTVGLSHPGS SSSSFQSSNV ALGKLPDQGR GKNHGFVGKG TCIPSRFAVD 180
181 EIESPTNNLS HSIGSSGDIM SPDIFGFSGQ M
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
