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View Structure Prediction Details

Protein: gi|255674164, gi...
Organism: Oryza sativa Japonica Group
Length: 650 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|255674164, gi....

Description E-value Query
Range
Subject
Range
gi|15218843, gi|... - gi|6227016|gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene f...
396.0 [0..1] [556..1]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
   61 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH 120
  121 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.39794
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [161-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKIIEHYGVV HHHVEQPQWM TSSIDRSPTL DVSCDGRGDD FESSSFSFPT ETPMDSMHGG  60
   61 FGMQMSAPHE DGKWMQFLSE DAFNATNPFL TNPVSANFSC LPSKVDVALE CARLQHRLTL 120
  121 PPLEVEDFPQ DVSLDTKIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [300-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILRSNPNEVD ILQEFLSVAT ASQELINGST SSYPEMWLGA STSSASYVNE LSSLVEMGGV  60
   61 GTSNHHESAR LQVEIADMEV FKDEKKRVEN LRGVKLVNND LGEIVVEGDE SNPTEDIIAQ 120
  121 YPIKVTADNS GEAGHRMTDP TDVGGIDTAP IFSQSQPDDF AAGFDDVNPN ASFDLYEKVD 180
  181 VNHRLFVSRV AAAKTFFHRI EPSKKVSFHS NPAATAVSKA TEKFHFPVTT KVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [533-650]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRVSIFSKFK ALIRDKFLMM RPSHSYQRLG SKETTVNELL QIVSLLLAPK QINGCPTEQE  60
   61 LVKKKAKEVM KPGWGREGSN KLWLPLSKGK GISSMFLSGK WTFLTSALAI STPAECDH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle