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View Structure Prediction Details

Protein: gi|215697434, gi...
Organism: Oryza sativa Japonica Group
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215697434, gi....

Description E-value Query
Range
Subject
Range
gi|48716358, gi|... - gi|50915928|ref|XP_468428.1| OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)...
234.0 [0..1] [212..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMCEKDQNF HWGYDLFRDP FAPIGYYGPP HGYGDGNYCD LHYARDASHL DETHLHSSAL  60
   61 TYDLYNPSVG IYHPGNAGEH DHDTVYIEPT SSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCPDTDDSFP MDEEVGKRFY PMVPVPHVPK INGEIPSVDE ATMDHERLTE RLRLYELVEH  60
   61 KVKGDGNCQF RALSDQLYQS PDHHEFVRQQ IMSQLKSNRD AYDGYVPMAY DDYLEKVSQN 120
  121 GEWGDHVTLQ AAADKYGVKI FVMTSFKDTC YIEIQPKVQK SNKVVLLSFW AEVHYNSIYP 180
  181 QNDAPRSQTT RKRRWWPFSH NHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.30103
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.529663942126259 bayes_pls_golite062009
hydrolase activity 0.16837900182603 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle