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View Structure Prediction Details

Protein: gi|215697434, gi...
Organism: Oryza sativa Japonica Group
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215697434, gi....

Description E-value Query
Range
Subject
Range
gi|48716358, gi|... - gi|50915928|ref|XP_468428.1| OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)...
234.0 [0..1] [212..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMCEKDQNF HWGYDLFRDP FAPIGYYGPP HGYGDGNYCD LHYARDASHL DETHLHSSAL  60
   61 TYDLYNPSVG IYHPGNAGEH DHDTVYIEPT SSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCPDTDDSFP MDEEVGKRFY PMVPVPHVPK INGEIPSVDE ATMDHERLTE RLRLYELVEH  60
   61 KVKGDGNCQF RALSDQLYQS PDHHEFVRQQ IMSQLKSNRD AYDGYVPMAY DDYLEKVSQN 120
  121 GEWGDHVTLQ AAADKYGVKI FVMTSFKDTC YIEIQPKVQK SNKVVLLSFW AEVHYNSIYP 180
  181 QNDAPRSQTT RKRRWWPFSH NHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.30103
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.529663942126259 bayes_pls_golite062009
hydrolase activity 0.16837900182603 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle