| Protein: | gi|46805510, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 621 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46805510, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
546.0 | [0..12] | [595..20] |
|
|
326.0 | [0..214] | [621..1] |
|
|
230.0 | [0..250] | [595..333] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MEVGGPQDAL DNRSDDNDFD KNDNSDPVVY QLVRVEGDGT LIPATEDEVL QFETFLHDEK 60
61 VDDDLPSIDD VTHVEEYFTN DCIVKKPEFE EGPSKLDTAD VQTQKLDAGL EEDRLCTLND 120
121 SIVLPSNCSA VHDQQLDKLN TEQGANIIAQ QDNASTETTK STVLNDLSSD KEKADACSKP 180
181 VNEASAGQSV SGVTSSVPDF SILKGEVCLD DLTMRELQEA FRATFGRQTT VKDKLWLKRR 240
241 IAMGLI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [247-343] |
1 11 21 31 41 51
| | | | | |
1 NSCDVPSSGC VVRDYKVIAM GAKQEIPVVE AIPKMELEAN LVRDQVMNPG HERDLPSSLS 60
61 YHSEEQQRSS KRLKRVPTDN DEPQVTIFAE QGTTKRI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.445 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.438 | N/A | N/A | d.64.1 | eIF1-like |
| View | Download | 0.429 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.423 | N/A | N/A | a.118.21 | Description not found. |
| View | Download | 0.423 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.423 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.421 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.344 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.332 | N/A | N/A | g.53.1 | TAZ domain |
|
Region A: Residues: [344-457] |
1 11 21 31 41 51
| | | | | |
1 RKPTKRYIEE LSDIDTHEST GRLSSPGKRH VYDEVLLRPR IAPLHEVDSL STAYPTREDT 60
61 LGGCSVHVPY VSRMRRGRPR SNFIPFLDPE PSVECTEAPA ADVVNLEKEG ERKN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.557 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.443 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.432 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.411 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.402 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.385 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.378 | b.1.2 | Fibronectin type III |
| View | Download | 0.359 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.340 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.284 | d.58.18 | Regulatory domain in the aminoacid metabolism |
|
Region A: Residues: [458-621] |
1 11 21 31 41 51
| | | | | |
1 HKNTGKKGVH VETSCEKDVQ GLQDKDFCDS DDNPKTKRGG KRKHHRAWTL CEVVKLVDGV 60
61 ARYGAGKWSE IRRLAFSSYS YRTSVDLKDK WRNLIRASQT QLSTENDGVC PRKSNPSAIP 120
121 IPVSILLRVK KLAEMQSQAG DVRVPIKFSG QSTTVVQGKV SGFL
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
