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View Structure Prediction Details

Protein: gi|115447059, gi...
Organism: Oryza sativa Japonica Group
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115447059, gi....

Description E-value Query
Range
Subject
Range
gi|4850383, gi|2... - gi|4850383|gb|AAD31053.1|AC007357_2 Contains similarity to gi|4417304 F15O11.7 putative beta-1,4-man...
625.0 [0..2] [390..3]
gi|215695200, gi... - gi|50925145|ref|XP_472878.1| OSJNBa0044K18.7 [Oryza sativa (japonica cultivar-group)], gi|38605764|e...
gi|116309905, gi... - gi|125548719|gb|EAY94541.1| hypothetical protein OsI_16317 [Oryza sativa Indica Group], gi|116309905...
613.0 [0..1] [391..1]
gi|45433905 - gi|45433905|emb|CAF33485.2| putative N-acetylglucosaminyltransferase III [Cucumis sativus]
609.0 [0..2] [391..7]
gi|61845111 - gi|61845111|emb|CAI70376.1| beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...
606.0 [0..2] [391..3]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAGYYNCK KNDGGICGGV CGGSEHGSKA ILSMSRLKCA LRGFDLRALL ILLIGVPALI  60
   61 FIIYVHGQKV TYFLRPIWEK PPKPFNVLPH YYHENVSMAN LCKLHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKVRETPRRV FDAVLFSNEL DILDIRWHEL SPYVSEFVLL ESNSTFTGLK KDLHFKENRQ  60
   61 RFEFAESRLT YGMIGGRFVK GENPFVEESY QRVALDQLIK IAGITDDDLL IMSDVDEIPS 120
  121 GHTINLLRWC D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [238-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTPEVLHLQL RNYLYSFQFL LDDKSWRASI HRYRAGKTRY AHFRQTDDLL ADSGWHCSFC  60
   61 FRHINDFVFK MQAYSHVDRI RFKYFLNPKR IQHVICQGAD LFDMLPEEYT FQEIIAKLGP 120
  121 IPSTFSAVHL PAYLLEKMDQ YRYLLPGNCM RESG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle