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View Structure Prediction Details

Protein: gi|115447059, gi...
Organism: Oryza sativa Japonica Group
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115447059, gi....

Description E-value Query
Range
Subject
Range
gi|4850383, gi|2... - gi|4850383|gb|AAD31053.1|AC007357_2 Contains similarity to gi|4417304 F15O11.7 putative beta-1,4-man...
625.0 [0..2] [390..3]
gi|215695200, gi... - gi|50925145|ref|XP_472878.1| OSJNBa0044K18.7 [Oryza sativa (japonica cultivar-group)], gi|38605764|e...
gi|116309905, gi... - gi|125548719|gb|EAY94541.1| hypothetical protein OsI_16317 [Oryza sativa Indica Group], gi|116309905...
613.0 [0..1] [391..1]
gi|45433905 - gi|45433905|emb|CAF33485.2| putative N-acetylglucosaminyltransferase III [Cucumis sativus]
609.0 [0..2] [391..7]
gi|61845111 - gi|61845111|emb|CAI70376.1| beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...
606.0 [0..2] [391..3]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAGYYNCK KNDGGICGGV CGGSEHGSKA ILSMSRLKCA LRGFDLRALL ILLIGVPALI  60
   61 FIIYVHGQKV TYFLRPIWEK PPKPFNVLPH YYHENVSMAN LCKLHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKVRETPRRV FDAVLFSNEL DILDIRWHEL SPYVSEFVLL ESNSTFTGLK KDLHFKENRQ  60
   61 RFEFAESRLT YGMIGGRFVK GENPFVEESY QRVALDQLIK IAGITDDDLL IMSDVDEIPS 120
  121 GHTINLLRWC D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.765 N/A N/A c.26.1 Nucleotidylyl transferase
View Download 0.765 N/A N/A c.26.1 Nucleotidylyl transferase
View Download 0.745 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.724 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.671 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.671 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.662 N/A N/A a.1.1 Globin-like
View Download 0.662 N/A N/A a.1.1 Globin-like
View Download 0.651 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.636 N/A N/A c.23.1 CheY-like

Predicted Domain #3
Region A:
Residues: [238-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTPEVLHLQL RNYLYSFQFL LDDKSWRASI HRYRAGKTRY AHFRQTDDLL ADSGWHCSFC  60
   61 FRHINDFVFK MQAYSHVDRI RFKYFLNPKR IQHVICQGAD LFDMLPEEYT FQEIIAKLGP 120
  121 IPSTFSAVHL PAYLLEKMDQ YRYLLPGNCM RESG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle