YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215701373, gi...
Organism:	Oryza sativa Japonica Group
Length:	394 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215701373, gi....

Description	E-value	Query Range	Subject Range
gi\|15232479, gi\|... - gi\|25083912\|gb\|AAN72133.1\| unknown protein [Arabidopsis thaliana], gi\|20466161\|gb\|AAM20398.1\| unknow...	265.0	[0..109]	[393..105]
gi\|218201458 - gi\|218201458\|gb\|EEC83885.1\| hypothetical protein OsI_29890 [Oryza sativa Indica Group] gi\|50947631, gi\|... - gi\|51965020\|ref\|XP_507294.1\| PREDICTED P0700D12.111 gene product [Oryza sativa (japonica cultivar-gr...	240.0	[0..126]	[386..107]
gi\|24982818, gi\|... - gi\|26988092\|ref\|NP_743517.1\| hypothetical protein PP_1358 [Pseudomonas putida KT2440], gi\|24982818\|g...	200.0	[0..104]	[392..7]
gi\|85713439, gi\|... - gi\|85713439\|ref\|ZP_01044429.1\| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Nitrobacter s...	200.0	[0..143]	[390..2]
gi\|67865705, gi\|... - gi\|67927161\|ref\|ZP_00520355.1\| Pyridoxamine 5'-phosphate oxidase-related [Solibacter usitatus Ellin6...	199.0	[0..126]	[389..9]
gi\|109700094, gi... - gi\|76792680\|ref\|ZP_00775177.1\| Pyridoxamine 5'-phosphate oxidase-related [Pseudoalteromonas atlantic...	198.0	[0..154]	[392..10]
gi\|82740003, gi\|... - gi\|82740003\|ref\|ZP_00902775.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82712919\|g...	197.0	[0..150]	[392..5]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLVRSPVT SPPAIAGAAS PSPSRSLSRR RAPPDAAAFP KPWVIPSSSV KSAACLQLQQ  60
   61 ARAPRRCARL LASAAEGGRR GEEGSPASS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDADDQAEAL PFLESDSHHT QTSKHGESGG SNSGGSRAGL FRTPISGGVH TATSVHD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [147-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPPPARAVRN LMEQARFAHL CTVMSRMHHR RAGYPFGSLV DFAPDPMGHP IFSLSPLAIH  60
   61 TRNLLEDPRC TVVVQVPGWS GLSNARVTIF GDVVPLPADL QEWAHQQYVL KHQQWASHQW 120
  121 GNFYYYKMQT ISDIYFIGGF GTVAWLDVKE YEALKPDKIA TDGGEQSLKE LNAMYSKPLK 180
  181 ELLSTEIEVD DAALISIDSK GIDIRVRQGA QFNIQRIAFE LHYSVETLEE AKEAIRRILG 240
  241 KSRWHAKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	2arzA
Description:	Crystal structure of hypothetical protein from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits