YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9657745, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9657745, gi|1....

Description	E-value	Query Range	Subject Range
gi\|46138933, gi\|... - gi\|46138933\|ref\|XP_391157.1\| hypothetical protein FG10981.1 [Gibberella zeae PH-1], gi\|42552464\|gb\|E...	200.0	[0..7]	[204..332]
gi\|22778813, gi\|... - gi\|23100580\|ref\|NP_694047.1\| xylan 1,4-beta-xylosidase [Oceanobacillus iheyensis HTE831], gi\|2277881...	196.0	[0..9]	[203..343]
gi\|56555509 - gi\|56555509\|gb\|AAV98258.1\| putative xylanase 33 [Gibberella zeae]	195.0	[0..7]	[204..332]
gi\|4038456 - gi\|4038456\|gb\|AAC97375.1\| xylan 1,4-beta-xylosidase [Bacillus pumilus]	194.0	[0..9]	[203..342]
gi\|85674415, gi\|... - gi\|89107145\|ref\|AP_000925.1\| predicted xylosidase/arabinosidase [Escherichia coli str. K-12 substr. ... YAGH_ECOLI - Putative beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) ... EG13347 - CP4-6 prophage; putative xylosidase /arabinosidase / Putative beta-xylosidase, function unknown, CP4-... gi\|170079896, gi... - gi\|170079896\|ref\|YP_001729216.1\| CP4-6 prophage; xylosidase/arabinosidase [Escherichia coli str. K-1... EG13347 - CP4-6 prophage; putative xylosidase /arabinosidase / Putative beta-xylosidase, function unknown, CP4-...	193.0	[0..8]	[204..343]
gi\|89097108, gi\|... - gi\|89097108\|ref\|ZP_01169998.1\| xylan 1,4-beta-xylosidase [Bacillus sp. NRRL B-14911], gi\|89087931\|gb...	191.0	[0..9]	[202..343]
gi\|38112087, gi\|... - gi\|39970039\|ref\|XP_366410.1\| hypothetical protein MG10628.4 [Magnaporthe grisea 70-15], gb\|EAA57556....	190.0	[0..8]	[205..337]
tr\|Q889B7\|Q889B7... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0837 PE=4 SV=1 tr\|F3GHK5\|F3GHK5... - Uncharacterized protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_31326 PE=4 SV=1 gi\|28868063, gi\|... - gi\|28868063\|ref\|NP_790682.1\| hypothetical protein PSPTO_0837 [Pseudomonas syringae pv. tomato str. D...	189.0	[0..1]	[209..1]
gi\|185177920, gi... - gi\|2773302\|gb\|AAB97967.1\| xylosidase/arabinosidase [Selenomonas ruminantium], gi\|185177920\|pdb\|3C2U\|...	189.0	[0..9]	[203..345]
gi\|2854060 - gi\|2854060\|gb\|AAC27699.1\| beta-xylosidase [Bacillus sp. KK-1]	186.0	[0..9]	[203..342]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMVNFTAGK WISEPKVSEV TSEFVSITTE PKTDFWQRSY YGFRNENAPA LLIDSKDNFT  60
   61 FTAKVSFAYQ QLFDQCGLII YLDNENWFKA SIEYENQSFS RLGSVVTNLG YSDWATTDIP 120
  121 LPKEIWYRLS RRGPDFLIES SFDGLVFNQM RIFHLHRLGE TTIEMGKCNP PLPTQKVVSF 180
  181 GVYACSPSES SFTAKFTEMS LEPCKWLAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.09691
Match:	1y7bA
Description:	BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbohydrate binding	0.0124152418993231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: