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View Structure Prediction Details

Protein: gi|47497675, gi|...
Organism: Oryza sativa Japonica Group
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|47497675, gi|....

Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPARVHSNG RLLMLLLLLA VAGFAAAQPS QDNPPAGYYA TNFSPSMAIV IVVLIAAFFF  60
   61 LGFFSIYVRH CYGGRGDYST TPLPRSGAAR SRRQRGLDQS VLATFPTMAY A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVKAHKSVKG ALECAVCISE FDDDETLRLL PKCSHVFHQD CIDTWLASHA TCPVCRANLV  60
   61 DGASEPASDV AAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1iymA
Description: EL5 RING-H2 domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [185-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPTAPAPRPE GATPSEAAAP GGEAPAAAAA AAVVIDVEET EEERIIREEA AELTRIGSLK  60
   61 RALRSKSGRA PAARFPRSHS TGHSLSSSAA ASAGAERFTL RLPEHVLREV IAAGQLQRTT 120
  121 SLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [308-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFRAGRQGST RRGLRSGGGG GGGEGSSRAG RSVRLGQSGR WPSFLPRTFS ARLPAWGSRS  60
   61 TRRGDGDGSS KGGRTAGSGA GAGGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle