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View Structure Prediction Details

Protein: gi|46806646, gi|...
Organism: Oryza sativa Japonica Group
Length: 1004 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46806646, gi|....

Description E-value Query
Range
Subject
Range
gi|42542392, gi|... - gi|62822266|gb|AAY14815.1| unknown [Homo sapiens], gi|42542392|ref|NP_005751.2| CCAAT/enhancer bindi...
607.0 [0..16] [995..65]
gi|73980160 - gi|73980160|ref|XP_863460.1| PREDICTED: similar to CCAAT/enhancer binding protein zeta isoform 2 [Ca...
607.0 [0..16] [995..65]
gi|109477834 - gi|109477834|ref|XP_343003.3| PREDICTED: similar to CCAAT/enhancer binding protein zeta [Rattus norv...
600.0 [0..16] [995..65]
gi|74186686 - gi|74186686|dbj|BAE34799.1| unnamed protein product [Mus musculus]
599.0 [0..16] [995..65]
gi|114576958 - gi|114576958|ref|XP_001166712.1| PREDICTED: CCAAT/enhancer binding protein zeta isoform 1 [Pan trogl...
596.0 [0..16] [995..65]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAKGKPTS TKKGRKAAAS AVAVGDDIDS LKSDVASFAS SLGFLGAAAA SSGFDDSDFR  60
   61 KSGPIIPPKT SKSAQTTDAP PNPKPTTTTT KKPHPLDIHG TNATTKSVSG AVTTNYPLMK 120
  121 ATALSGQWYA DAGELEASVL GARKQVLPSV GLQEMQRISE GKRQLAEKLM AQYTVEYDMV 180
  181 KR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [183-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGDLKLLEI SAKSGTSADK VSAFTCLIED NPIANMRALD SLLGMVTSKV GKRYAFTGFD  60
   61 ALKELFLKRV LPDRKLKSLI QHPLDILPET K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [274-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGYSLLLFWY WEDCLKQRYE KFVIALEDAL KDMLPNLKDK AMKTVFILLK EKAEQERRLL  60
   61 TALVNKLGDP ERRAASSAAY LLTSLLSAHP NMKMVVIDEV DSFLFRPHVG LRAKYQAVNF 120
  121 LSQIFLTSKG DGPKIAKRLV DVYIALFKVL MSCSRATEGV KHSKYGKKTN ENGKKEKGND 180
  181 FNSHVK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [460-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEDPCAGSDL EMDSRILSAL LTGVNRALPY VASSEVDDIV EVQTPILFRL VHSVNFNVGV  60
   61 QALMLLYQIS TKNQIASDRF YRALYAKLLS PASVTSSKPE LFLGLLVKAM KNDVMLKRVA 120
  121 AFAKRLLQVA LQRPPQYACG CLFILSEVLK AKPPLWAIVL QNESVDDGIE HFEDIVENTD 180
  181 CPAITSRTTD KCNDILATLE KCNSDAEDAC DTIECVSPIS SGEKDGKGTS AEGLTLQASY 240
  241 NPRHR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [705-796]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPSYCNADHA SWWELTALAL HVHPSVSTMA RTLLSGNNIV YSGDPLTDLS LPAFLDKFME  60
   61 KKPKGNRIAE GKWHGGSQIA PAKKLDQSHH LI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [797-1004]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEELLELVEK EVPPEDVVFH RFYMNKTGPI KPKAKKKTAV LDEDTGELFA DDVDDASDES  60
   61 DDEMQELGIG SIEDGEYDYD NLDATTFEEE GDLLRYDSDV ELHDISDDIS SGADSDTEAL 120
  121 EGANHSDGND SDGEEPVQGQ KRKHGAKSGA SPFAKLEDYE HLMDGEAEKP TFKKGRKHRV 180
  181 TRDSKEKRKG LSSKEKSGSR KKRSKRSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle