YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215678662, gi...
Organism:	Oryza sativa Japonica Group
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215678662, gi....

Description	E-value	Query Range	Subject Range
gi\|50754935 - gi\|50754935\|ref\|XP_414548.1\| PREDICTED: similar to protein expressed in T-cells and eosinophils in a...	349.0	[0..1]	[465..95]
PUX10_ARATH - Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1	348.0	[0..7]	[464..6]
gi\|109079875 - gi\|109079875\|ref\|XP_001090859.1\| PREDICTED: similar to UBX domain containing 8 [Macaca mulatta]	347.0	[0..1]	[465..180]
gi\|114603543 - gi\|114603543\|ref\|XP_518117.2\| PREDICTED: UBX domain containing 8 [Pan troglodytes]	340.0	[0..1]	[465..76]
gi\|13544017 - gi\|13544017\|gb\|AAH06145.1\| UBX domain containing 8 [Homo sapiens]	338.0	[0..1]	[465..13]
ENSPTRT00000032460 - null tr\|M3XCS5\|M3XCS5... - Fas associated factor family member 2 OS=Felis catus GN=FAF2 PE=4 SV=1 ENSMMUG000000090... - null, null gi\|73953321 - gi\|73953321\|ref\|XP_546218.2\| PREDICTED: similar to protein expressed in T-cells and eosinophils in a...	335.0	[0..1]	[465..9]
FAF2B_XENLA - FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1	335.0	[0..1]	[465..9]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETVDDKVS YFQAVTGISD HDLCTEILAA HNWDLQLAVS SITANPSSPD PAPSAPLPPL  60
   61 APREADLVAP HLPPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.0
Match:	2damA
Description:	No description for 2damA was found.

Predicted Domain #2

Region A:
Residues: [76-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQQQQQQQQP GIAWKLVTLP FYVVSGGVGL IAGSIRLGAW VAGGVLSRSL SILGLAQGGG  60
   61 GGGDRLLELP PSAAEAADFV AEFEREFGAG R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [167-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPHFVAEGFA DALQRAQREY KLLFVYLHSP DHPDTPAFCG GCLCAEPVAA FIDENFVAWG  60
   61 GSIRRTEGFK MSNSLNASRF PFCAVVMAST NQRIVLLRQI E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.045757
Match:	2dlxA
Description:	No description for 2dlxA was found.

Predicted Domain #4

Region A:
Residues: [268-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPKSPEEMIT TLQGAVEECS ASLVAARIDA EERLNNQRLR EEQDAAYRAA LEADQARERQ  60
   61 RREEQEKRER EAAEAERKRK EEEEAQERAA QEAAEKEAAL ARRRQEKAMA LGAEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	1dg3A
Description:	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [383-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKGPDVTRVL IRFPTGERKE RRFNSSTTIT SLYDYVDSLD CLKAEKYSLV SNFPRVTYGP  60
   61 EKLSQTLEEA GLHPQASLFI EIEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	1wj4A
Description:	Solution structure of the UBX domain of KIAA0794 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits