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View Structure Prediction Details

Protein: gi|20804693, gi|...
Organism: Oryza sativa Japonica Group
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20804693, gi|....

Description E-value Query
Range
Subject
Range
GDPD5_ARATH - Glycerophosphodiester phosphodiesterase GDPD5 OS=Arabidopsis thaliana GN=GDPD5 PE=2 SV=1
292.0 [0..9] [388..9]

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Predicted Domain #1
Region A:
Residues: [1-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSLRTIYF LLLLLPHVVF SRPLFPLPSK SNGIEKRPLQ TFRPYNIAHR GSNGEIPEET  60
   61 AAAYLRAIEE GADFIETDIL ASKDGALICF HDVTLDATTD VASRKEFSNR RRTYEVEWFN 120
  121 ATGWFVVDFT LEELKTLKVN QRYPFRDQQY NGKFSIITFE EFISIALDAS RTVGIYPEMK 180
  181 DPVFINKHVK WDGGKKFEDK FVDTLLKYGY KGQYMSENWL KQPLFIQSFA PTSLVHASKL 240
  241 TDSPKIFLID DFSVRTQDTN QSYWDITSDD YLAYISNYVV GLGPWKDTVV PAAKNYTMAP 300
  301 TDLVARAHAH NLQVHPYTYR NENQFLHLNF HQDPYAEYDF WINSMGVDGL FTDFTGSLHR 360
  361 YQELVAPHAK DETANSLLVK IAQMISQYEG F

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Detection Method: PSI-BLAST
Confidence: 62.0
Match: 1ydyA
Description: Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycerophosphodiester phosphodiesterase activity 4.27697417361287 bayes_pls_golite062009
phosphoric diester hydrolase activity 3.6633363681844 bayes_pls_golite062009
phospholipase activity 3.3535603060637 bayes_pls_golite062009
phosphoric ester hydrolase activity 2.89024275707278 bayes_pls_golite062009
phospholipase C activity 2.81479108775786 bayes_pls_golite062009
inositol or phosphatidylinositol phosphodiesterase activity 2.13368269358874 bayes_pls_golite062009
phosphoinositide phospholipase C activity 2.13368269358874 bayes_pls_golite062009
hydrolase activity 1.41001330359992 bayes_pls_golite062009
lipase activity 1.30779031242608 bayes_pls_golite062009
catalytic activity 1.22328099675039 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.21202479488854 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle