YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33354201, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33354201, gi|....

Description	E-value	Query Range	Subject Range
gi\|113679134, gi... - gi\|113679134\|ref\|NP_001038861.1\| mitochondrial ribosomal protein S9 [Danio rerio], gi\|112419128\|gb\|A...	436.0	[0..32]	[415..26]
gi\|165970703, gi... - gi\|62654970\|ref\|XP_217388.3\| PREDICTED: similar to mitochondrial ribosomal protein S9 [Rattus norveg...	428.0	[0..55]	[415..48]
gi\|157167676, gi... - gi\|157167676\|ref\|XP_001661636.1\| mitochondrial ribosomal protein, S9, putative [Aedes aegypti], gi\|1...	428.0	[0..7]	[415..14]
RT09_MOUSE - 28S ribosomal protein S9, mitochondrial OS=Mus musculus GN=Mrps9 PE=1 SV=3	424.0	[0..55]	[415..48]
gi\|147899069, gi... - gi\|147899069\|ref\|NP_001090517.1\| mitochondrial ribosomal protein S9 [Xenopus laevis], gi\|114107983\|g...	420.0	[0..24]	[415..16]
gi\|55599355 - gi\|55599355\|ref\|XP_515671.1\| PREDICTED: mitochondrial ribosomal protein S9 [Pan troglodytes]	415.0	[0..55]	[415..48]
MRPS9 - mitochondrial ribosomal protein S9	413.0	[0..55]	[415..48]
gi\|109104054 - gi\|109104054\|ref\|XP_001108643.1\| PREDICTED: similar to mitochondrial ribosomal protein S9 [Macaca mu...	412.0	[0..55]	[415..48]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRRLLHSS RRLGHRLQTL TPASAATAAA ASSSPVSAPL PFRRPLPASS LLWPRLLSTS  60
   61 GRDDDPNKPW AFTPESGDPD PFAAGEGVEA PAGEDPLGLS AAGEDPWAKD FRAEGSEKGD 120
  121 VFEEIFKEEA ATAAVASGEK APGAGADELW TLSGEDEKDP FAEAVLGGGL EGIGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGAAIDEADA GEDEEEEERK RLERRAREQE LMETLKGPNR AFGDLIEASG ITEDMIASLI  60
   61 LLKDVRGVPG LPPLREIEDE TIEKMNATSS RADVERQKQE EIAKARVRQV DEKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [290-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAYGTGKRKC SIARVWIQPG DGKFIVNDKQ FDSYFPILDH RADLLRPFTV TKTLGRWDVT  60
   61 CTVKGGGVSG QVGAIRLGIS RALQNWEPGL RPNLKAAGYL TRDSRVVERK KPGKAKARKS 120
  121 FQWVKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	1vs5I
Description:	No description for 1vs5I was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits