YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33354201, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33354201, gi|....

Description	E-value	Query Range	Subject Range
gi\|113679134, gi... - gi\|113679134\|ref\|NP_001038861.1\| mitochondrial ribosomal protein S9 [Danio rerio], gi\|112419128\|gb\|A...	436.0	[0..32]	[415..26]
gi\|165970703, gi... - gi\|62654970\|ref\|XP_217388.3\| PREDICTED: similar to mitochondrial ribosomal protein S9 [Rattus norveg...	428.0	[0..55]	[415..48]
gi\|157167676, gi... - gi\|157167676\|ref\|XP_001661636.1\| mitochondrial ribosomal protein, S9, putative [Aedes aegypti], gi\|1...	428.0	[0..7]	[415..14]
RT09_MOUSE - 28S ribosomal protein S9, mitochondrial OS=Mus musculus GN=Mrps9 PE=1 SV=3	424.0	[0..55]	[415..48]
gi\|147899069, gi... - gi\|147899069\|ref\|NP_001090517.1\| mitochondrial ribosomal protein S9 [Xenopus laevis], gi\|114107983\|g...	420.0	[0..24]	[415..16]
gi\|55599355 - gi\|55599355\|ref\|XP_515671.1\| PREDICTED: mitochondrial ribosomal protein S9 [Pan troglodytes]	415.0	[0..55]	[415..48]
MRPS9 - mitochondrial ribosomal protein S9	413.0	[0..55]	[415..48]
gi\|109104054 - gi\|109104054\|ref\|XP_001108643.1\| PREDICTED: similar to mitochondrial ribosomal protein S9 [Macaca mu...	412.0	[0..55]	[415..48]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRRLLHSS RRLGHRLQTL TPASAATAAA ASSSPVSAPL PFRRPLPASS LLWPRLLSTS  60
   61 GRDDDPNKPW AFTPESGDPD PFAAGEGVEA PAGEDPLGLS AAGEDPWAKD FRAEGSEKGD 120
  121 VFEEIFKEEA ATAAVASGEK APGAGADELW TLSGEDEKDP FAEAVLGGGL EGIGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGAAIDEADA GEDEEEEERK RLERRAREQE LMETLKGPNR AFGDLIEASG ITEDMIASLI  60
   61 LLKDVRGVPG LPPLREIEDE TIEKMNATSS RADVERQKQE EIAKARVRQV DEKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.537	a.29.16	Description not found.
View	Download	0.472	a.8.4	Description not found.
View	Download	0.437	a.244.1	Description not found.
View	Download	0.432	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.338	a.24.26	Description not found.
View	Download	0.272	d.79.2	Tubulin/Dihydroxyacetone kinase C-terminal domain

Predicted Domain #3

Region A:
Residues: [290-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAYGTGKRKC SIARVWIQPG DGKFIVNDKQ FDSYFPILDH RADLLRPFTV TKTLGRWDVT  60
   61 CTVKGGGVSG QVGAIRLGIS RALQNWEPGL RPNLKAAGYL TRDSRVVERK KPGKAKARKS 120
  121 FQWVKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	1vs5I
Description:	No description for 1vs5I was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits