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View Structure Prediction Details

Protein: gi|50939471, gi|...
Organism: Oryza sativa Japonica Group
Length: 652 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50939471, gi|....

Description E-value Query
Range
Subject
Range
gi|11358066, gi|... - gi|6899930|emb|CAB71880.1| putative protein [Arabidopsis thaliana], gi|15228700|ref|NP_191779.1| unk...
318.0 [0..2] [639..23]
gi|82958985, gi|... - gi|94401001|ref|XP_991327.1| PREDICTED: similar to limkain b1 isoform 2 [Mus musculus], gi|82958985|...
230.0 [0..8] [431..351]
LKAP_RAT - Limkain-b1 OS=Rattus norvegicus GN=Lkap PE=1 SV=1
223.0 [0..8] [431..350]
gi|18146750 - gi|18146750|dbj|BAB82433.1| Limkain b1 [Homo sapiens]
216.0 [0..8] [282..41]
gi|73958857 - gi|73958857|ref|XP_863003.1| PREDICTED: similar to limkain b1 isoform 1 isoform 2 [Canis familiaris]
213.0 [0..8] [431..353]
gi|114661172, gi... - gi|114661172|ref|XP_001149220.1| PREDICTED: limkain b1 isoform 4 [Pan troglodytes], gi|114661170|ref...
212.0 [0..8] [431..352]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEYATAKTS VWWDIENCQV PRACDPNLIA QNMSSALAAA GYTGPVSISA YGDIGRIGNA  60
   61 VTHALSSTGI SLNHVPAGIK DASDKKILVD MLFWAIDNPP PANYLLISGD RDFSNALHKL 120
  121 TMRRYNILLA QPPNVSQALT AAAKSVWLWK SLV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.45
Match: 2qipA
Description: No description for 2qipA was found.

Predicted Domain #2
Region A:
Residues: [154-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGEPPLAESP YVSSTASGNM VELDKSKNIN SDSSDTTTDT NPQNGLQSDH QKGGNGKADK  60
   61 Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [215-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKVKQPRRNQ SDNVSKPASN EENSVEVADN SKEYTTDHPT QSSMPSSSSS SSSESQDGAK  60
   61 VNQSSKPKVQ PFSLPKKPAK SAHCHQKTAP HDFNSKKSGA SAESAAKNGT PDSGNGGGYN 120
  121 PKHHKPHTSQ SPRPQNSITH PHSGSEIFHH TLSSQRTNSC SPSAGHNGAP TAPLQSWPSA 180
  181 PPYHSPPVN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [404-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPDLNRINIS GYPRGIHDNQ GVNMNYHPNH SGSPHNVQPA YNSYRPPTPP SMPSNMQNAG  60
   61 QWGVNPGYPQ PSSDPQGLIR NILGALEVLK TEKIPPIEQH ISDCIRYGEA NLPNFDVKKA 120
  121 LELAIQHQAI VLKM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [538-652]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGPMSFYLGK NQNLWKCVNI MDINAKYPKD TFDAVHRFIS STSGSSAIKN SRSKYQAAIV  60
   61 LKNQCLKHLA LGEVLQILYI IINTKKWFVP HSSGWQPLSF NIIVVDATTG AGGKA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle