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View Structure Prediction Details

Protein: gi|125601205, gi...
Organism: Oryza sativa Japonica Group
Length: 585 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125601205, gi....

Description E-value Query
Range
Subject
Range
gi|7267971, gi|7... - pir||T06628 hypothetical protein T20K18.50 - Arabidopsis thaliana, gi|7267971|emb|CAB78312.1| putat...
912.0 [0..39] [585..16]
gi|92869815 - gi|92869815|gb|ABE79305.1| Proteinase inhibitor I4, serpin [Medicago truncatula]
867.0 [0..38] [583..17]
gi|31432456, gi|... - gi|37534994|ref|NP_921799.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|31432456|g...
gi|125532210 - gi|125532210|gb|EAY78775.1| hypothetical protein OsI_33877 [Oryza sativa Indica Group]
786.0 [0..43] [583..28]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSDQDDHD EDAPLFRASS GDDDDHPHPR RRSSPVGEVP VAQSIIKAAS NVCFSLFVLA  60
   61 VLVVTVVAVT YQPPDPWLQS SAAITTSLSR VLPNSTFLLP DDSLLPTGED FNSSSSTPSA 120
  121 PRRDDPDQAT ATATAAAVNG TCDP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [145-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPLNCSDPR VLAAVKAFNA KAFFRKSIVF LSYEAPVPGP KPGECDVAWR FRNRREKSWR  60
   61 RYRDYRRFVL VPGDGCALDI NRVGKFRSGT NAARPPRQKG SKNRNPRVAP PPVDAEINDT 120
  121 IPIVGSEAEF RRGKYLYYMR GGDHCKSMNQ FIWSFLCGLG EAKFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRTFVMDLNM CLSGAHTNNG KDEDGKDFRY YFDFEHLKES VSVVEEGDFL KDWKRWDKKK  60
   61 GPGRISVRKV PSYKVTPMQL KRDKSNIIWR LFDGQEPENY WYRVCEGRAA KVIQRPWYAI 120
  121 WKSKRLMNIV TEIAGRMDWD YDGLHVIR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [458-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWKAQNKQMY PNLDADTSPE ALVDKVPKLI KQPMRNLYIA TNEPFYNYFD KLRSYFHVHL  60
   61 LDDYKELWSN TSEWYNETTT LSGGRPVPFD AYMRVIVDTE VFYRAKTQVE TFNNLTRDCK 120
  121 DGINTCNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle