YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33576711, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33576711, gi|....

Description	E-value	Query Range	Subject Range
gi\|33571969, gi\|... - gi\|33592324\|ref\|NP_879968.1\| hypothetical protein BP1194 [Bordetella pertussis Tohama I], gi\|3357196...	199.0	[0..1]	[205..1]
gi\|91776398, gi\|... - gi\|91776398\|ref\|YP_546154.1\| NUDIX hydrolase [Methylobacillus flagellatus KT], gi\|91710385\|gb\|ABE503...	174.0	[0..11]	[204..1]
gi\|88944793, gi\|... - gi\|88944793\|ref\|ZP_01148017.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes [...	171.0	[0..19]	[195..2]
gi\|67548288, gi\|... - gi\|67548288\|ref\|ZP_00426179.1\| NUDIX hydrolase [Burkholderia vietnamiensis G4], gi\|67530371\|gb\|EAM27...	170.0	[0..11]	[201..1]
gi\|82703351, gi\|... - gi\|82703351\|ref\|YP_412917.1\| NUDIX hydrolase [Nitrosospira multiformis ATCC 25196], gi\|82411416\|gb\|A...	170.0	[0..5]	[198..2]
gi\|115282311, gi... - gi\|74020218\|ref\|ZP_00690821.1\| NUDIX hydrolase [Burkholderia ambifaria AMMD], gi\|72607055\|gb\|EAO4302...	168.0	[0..11]	[202..1]
gi\|67660957, gi\|... - gi\|67660957\|ref\|ZP_00458290.1\| NUDIX hydrolase [Burkholderia cenocepacia AU 1054], gi\|67091458\|gb\|EA... gi\|254247672, gi... - gi\|84355277\|ref\|ZP_00980165.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|67662030, gi\|... - gi\|67662030\|ref\|ZP_00459321.1\| NUDIX hydrolase [Burkholderia cenocepacia HI2424], gi\|67104615\|gb\|EAM...	168.0	[0..11]	[202..1]
gi\|167580438 - gi\|167580438\|ref\|ZP_02373312.1\| pyrophosphatase, MutT/nudix family protein [Burkholderia thailandens... gi\|83655279, gi\|... - gi\|83721454\|ref\|YP_441629.1\| MutT/NUDIX NTP pyrophosphatase [Burkholderia thailandensis E264], gi\|83...	167.0	[0..11]	[201..1]
gi\|46310739, gi\|... - gi\|78067031\|ref\|YP_369800.1\| NUDIX hydrolase [Burkholderia sp. 383], gi\|77967776\|gb\|ABB09156.1\| NUDI...	167.0	[0..11]	[202..1]
gi\|237502719, gi... - gi\|237811597\|ref\|YP_002896048.1\| pyrophosphatase, MutT/nudix family [Burkholderia pseudomallei MSHR3... gi\|124386534, gi... - gi\|124386534\|ref\|YP_001026713.1\| MutT/NUDIX NTP pyrophosphatase [Burkholderia mallei NCTC 10229], gi... gi\|126221395, gi... - gi\|67736848\|ref\|ZP_00487681.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|167845020 - gi\|167845020\|ref\|ZP_02470528.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei B7210] gi\|121230131, gi... - gi\|84523156\|ref\|ZP_01010292.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|167902007 - gi\|167902007\|ref\|ZP_02489212.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei NCTC 1317... gi\|67670730, gi\|... - gi\|99909779\|ref\|ZP_01316890.1\| hypothetical protein Bpse1_03003709 [Burkholderia pseudomallei 1655],... gi\|167737869 - gi\|167737869\|ref\|ZP_02410643.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei 14] gi\|126448430, gi... - gi\|67647531\|ref\|ZP_00445772.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|167823468 - gi\|167823468\|ref\|ZP_02454939.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei 9] gi\|148029087, gi... - gi\|87314797\|ref\|ZP_01095835.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|194316170, gi... - gi\|254175424\|ref\|ZP_04882084.1\| pyrophosphatase, MutT/nudix family [Burkholderia mallei ATCC 10399],... gi\|52429216, gi\|... - gi\|53725793\|ref\|YP_103419.1\| MutT/NUDIX NTP pyrophosphatase [Burkholderia mallei ATCC 23344], gi\|524... gi\|194517638, gi... - gi\|67761505\|ref\|ZP_00500214.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|167910243 - gi\|167910243\|ref\|ZP_02497334.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei 112] gi\|85065165 - gi\|85065165\|ref\|ZP_01026018.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|167918276 - gi\|167918276\|ref\|ZP_02505367.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei BCC215] gi\|242316771, gi... - gi\|82535978\|ref\|ZP_00894988.1\| hypothetical protein Bpse110_02002677 [Burkholderia pseudomallei 1106... gi\|147746342, gi... - gi\|83620221\|ref\|ZP_00930643.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|126453829, gi... - gi\|82529609\|ref\|ZP_00888854.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|100915616, gi... - gi\|67636200\|ref\|ZP_00435148.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|243063687, gi... - gi\|243063687\|gb\|EES45873.1\| pyrophosphatase, MutT/nudix family [Burkholderia mallei PRL-20], gi\|1670... gi\|67642177, gi\|... - gi\|67642177\|ref\|ZP_00440937.1\| pyrophosphatase, MutT/nudix family [Burkholderia mallei GB8 horse 4],... gi\|167718861 - gi\|167718861\|ref\|ZP_02402097.1\| hydrolase, NUDIX family protein [Burkholderia pseudomallei DM98] gi\|194527309, gi... - gi\|83623805\|ref\|ZP_00934066.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|157808382, gi... - gi\|83678391\|ref\|ZP_00940119.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|225932581, gi... - gi\|226195379\|ref\|ZP_03790968.1\| hydrolase, NUDIX family [Burkholderia pseudomallei Pakistan 9], gi\|2...	166.0	[0..11]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAARMPANA MSADPSDSSH LVETLVSSET LCDGGFLKAR RDTVRLPSGR TATREYIVHP  60
   61 GAVVVVPLLD DGRVLLERQF RYPIGQVMTE FPAGKLDPGE DPLACARREL LEETGYTAGQ 120
  121 WASAGALHLA IAYSTEIIHI FFARQLRAGT RQLDEDEFLD VHSATVPELL QACREGRVTD 180
  181 AKTLTCVLWL QNVLAGDWPL DWQPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1mk1A
Description:	Structure of the MT-ADPRase in complex with ADPR, a Nudix enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.53151917641084	bayes_pls_golite062009
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.859040726089354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.859001295204634	bayes_pls_golite062009
pyrophosphatase activity	0.231401568856773	bayes_pls_golite062009
binding	0.165092558977235	bayes_pls_golite062009
nucleoside-diphosphatase activity	0.123453631031085	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: