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View Structure Prediction Details

Protein: gi|7469381
Organism: Synechocystis sp.
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7469381.

Description E-value Query
Range
Subject
Range
gi|17133602, gi|... - gi|17231958|ref|NP_488506.1| Ap4A phosphorylase II [Nostoc sp. PCC 7120], gi|17133602|dbj|BAB76165.1...
gi|25530194 - pir||AB2364 Ap4A phosphorylase II [imported] - Nostoc sp. (strain PCC 7120)
405.0 [0..15] [301..1]
gi|75703260, gi|... - gi|75909535|ref|YP_323831.1| Ap4A phosphorylase II [Anabaena variabilis ATCC 29413], gi|75703260|gb|...
399.0 [0..15] [301..1]
gi|53687949 - gi|53687949|ref|ZP_00345508.1| COG4360: ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phos...
381.0 [0..15] [301..1]
gi|67854047, gi|... - gi|67924122|ref|ZP_00517568.1| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...
370.0 [0..20] [299..5]
gi|48891692, gi|... - gi|71678064|ref|ZP_00675794.1| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...
366.0 [0..19] [299..1]
gi|33634921, gi|... - gi|33863004|ref|NP_894564.1| putative ATP adenylyltransferase [Prochlorococcus marinus str. MIT 9313...
315.0 [0..30] [298..7]
gi|33632937, gi|... - gi|33865767|ref|NP_897326.1| ATP adenylyltransferase [Synechococcus sp. WH 8102], gi|33632937|emb|CA...
308.0 [0..29] [298..6]
gi|90411819, gi|... - gi|90411819|ref|ZP_01219828.1| hypothetical Ap4A phosphorylase II [Photobacterium profundum 3TCK], g...
307.0 [0..30] [297..3]
gi|46913056, gi|... - gi|54308627|ref|YP_129647.1| Ap4A phosphorylase II [Photobacterium profundum SS9], gi|46913056|emb|C...
306.0 [0..30] [297..3]
gi|33240411, gi|... - gi|33240411|ref|NP_875353.1| putative ATP adenylyltransferase [Prochlorococcus marinus subsp. marinu...
304.0 [0..28] [298..5]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNVVARCQE RSYLFALTMA ESYLLPGQLW PRLLAQSDHA LKTGALQPIT TAVTTLEVGE  60
   61 INFVVRILTQ IHRKKIITEH Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRQKINPFLP YDADLFVGHF SPTHLGLLNK FKVVDQHLLI VTREFEDQQS PLTLGDFGVA  60
   61 VQVLEEKEGL VFYNSGPKAG ASQPHRHLQW IPFPLVENGQ KFPLADHFIQ AKNLPFKTAI 120
  121 APLTMDVIND ADGGKICYQI YQDLLQQLGL QT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.88
Match: 1fhiA
Description: SUBSTRATE ANALOG (IB2) COMPLEX WITH THE FRAGILE HISTIDINE TRIAD PROTEIN, FHIT
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [234-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGGAKPHPYN LLMTREFLAI VPRSQESYQD IEVNALGFAG GLLVRNQQQL ELLQQLGPWQ  60
   61 LLQKVGIAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle